Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01724 ATGATACTGTCTATCATTGTTGTGAAGGGATCAAGTTCAAAAGAAGAAGTAACATGTGACGACGCCAAGATTTATCTCCAGGAAATAAAAGTTGCATTTAAAGACGAGAAGCAAAAGTTCAATGAGTTTTTAAAGACCATGAAAGATATCAAGAAAAAAAGAGCTGAAATAGCGAGTATGCTGGCAAGAGTGAAGGAAATGTTTGAAGGGCATGGAGAATTGTTATTGAAATTTAATACCTATTTGTCAGATGAATTTGAAATCGCACCTTCGCCAGAGAAGCCAGAAGTGAAGAAGCCAGAAGTAAATATTGAATATGCTAGGAAATATTTGGACAATGTCAAGACTCGTTTTCAAGGTGATCCTAACGTTTACAAATCGTTTTTAACTATACTGAATATGTATAGAAACAAAGAAAAGAGTCGTGAGGAGGTTTTACAAATGGTTATTTCACTTTTTAAAGACCAGTCTGATCTTGTTGAGGGGTTTATTGACTTTCTTCCATGA 507 0.3471 MILSIIVVKGSSSKEEVTCDDAKIYLQEIKVAFKDEKQKFNEFLKTMKDIKKKRAEIASMLARVKEMFEGHGELLLKFNTYLSDEFEIAPSPEKPEVKKPEVNIEYARKYLDNVKTRFQGDPNVYKSFLTILNMYRNKEKSREEVLQMVISLFKDQSDLVEGFIDFLP 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01724 168 Gene3D Paired amphipathic helix 107 168 IPR036600 GO:0006355
Vivi2g01724 168 PANTHER SIN3B-RELATED 18 168 IPR039774 GO:0003714
Vivi2g01724 168 FunFam Paired amphipathic helix SIN3-like protein 99 168 - -
Vivi2g01724 168 FunFam Paired amphipathic helix protein Sin3 21 83 - -
Vivi2g01724 168 ProSiteProfiles PAH domain profile. 100 168 IPR003822 GO:0006355
Vivi2g01724 168 Pfam Paired amphipathic helix repeat 39 82 IPR003822 GO:0006355
Vivi2g01724 168 Pfam Paired amphipathic helix repeat 124 167 IPR003822 GO:0006355
Vivi2g01724 168 SUPERFAMILY PAH2 domain 12 84 IPR036600 GO:0006355
Vivi2g01724 168 SUPERFAMILY PAH2 domain 98 168 IPR036600 GO:0006355
Vivi2g01724 168 ProSiteProfiles PAH domain profile. 13 85 IPR003822 GO:0006355
Vivi2g01724 168 Gene3D Paired amphipathic helix 21 82 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01724 Vivi-Chr2 79370545 79374378 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01724 6 93 WRKY Transcription Factor Family AT4G12020 38.636 3.04e-15 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g01724 PAH 4.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01724 K11644 - vvo:131646330 322.398