Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01723 ATGAGCAAGGGATCAAGTTCAAAAGAAGAAGTAACATGTGACGACGCCAAGATTTATCTCCAGGAAATAAAAGTTGCATTTAAAGACGAGAAGCAAAAGTTCAATGAGTTTTTAAAGACCATGAAAGATATCAAGAAAAAAAGAGCTGAAATAGCGAGTATGCTGGCAAGAGTGAAGGAAATGTTTGAAGGGCATGGAGAATTGTTATTGAAATTTAATACCTATTTGTCAGATGAATTTGAAATCGCACCTTCGCCAGAGAAGCCAGAAGTGAAGAAGCCAGAAGTAAATATTGAATATGCTAGGAAATATTTGGACAATGTCAAGACTCGTTTTCAAGGTGATCCTAACGTTTACAAATCGTTTTTAACTATACTGAATATGTATAGAAACAAAGAAAAGAGTCGTGAGGAGGTTTTACAAATGGTTATTTCACTTTTTAAAGACCAGTCTGATCTTGTTGAGGGGTTTATTGACTTTCTTCCATGA 489 0.3497 MSKGSSSKEEVTCDDAKIYLQEIKVAFKDEKQKFNEFLKTMKDIKKKRAEIASMLARVKEMFEGHGELLLKFNTYLSDEFEIAPSPEKPEVKKPEVNIEYARKYLDNVKTRFQGDPNVYKSFLTILNMYRNKEKSREEVLQMVISLFKDQSDLVEGFIDFLP 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01723 162 ProSiteProfiles PAH domain profile. 7 79 IPR003822 GO:0006355
Vivi2g01723 162 Gene3D Paired amphipathic helix 15 76 IPR036600 GO:0006355
Vivi2g01723 162 ProSiteProfiles PAH domain profile. 94 162 IPR003822 GO:0006355
Vivi2g01723 162 PANTHER SIN3B-RELATED 12 162 IPR039774 GO:0003714
Vivi2g01723 162 Gene3D Paired amphipathic helix 101 162 IPR036600 GO:0006355
Vivi2g01723 162 SUPERFAMILY PAH2 domain 92 162 IPR036600 GO:0006355
Vivi2g01723 162 FunFam Paired amphipathic helix protein Sin3 15 77 - -
Vivi2g01723 162 Pfam Paired amphipathic helix repeat 118 161 IPR003822 GO:0006355
Vivi2g01723 162 Pfam Paired amphipathic helix repeat 33 76 IPR003822 GO:0006355
Vivi2g01723 162 FunFam Paired amphipathic helix SIN3-like protein 93 162 - -
Vivi2g01723 162 SUPERFAMILY PAH2 domain 6 78 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01723 Vivi-Chr2 79370149 79374374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01723 11 87 WRKY Transcription Factor Family AT4G12020 42.857 1.09e-14 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g01723 PAH 3.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01723 K11644 - vvo:131646330 309.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g01723 2 79370149 79374374 Vivi2g01723 2 79370149 79374374 ECH