Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01714 ATGGCCAAGAAGATGAATAAAAGAAGTGCTAAGAAGCCAACTGTTAATATAGAATATGCTTCGAAATTTGTGACTAAGGTGAAGACTCGATTTGGACGTGCTCATCAGCATCATGTTTATCCATTGTTTCTGAGCATCCTGAATTCATATAGAGAAAACAAAAGGAGTCTTGATGATGTCATTAGGGATGTTAATTTGCTTTTCGAAGGCCATGATGATCTGATTGACGACTTTACTAATTTTCTTCCTTGA 252 0.3611 MAKKMNKRSAKKPTVNIEYASKFVTKVKTRFGRAHQHHVYPLFLSILNSYRENKRSLDDVIRDVNLLFEGHDDLIDDFTNFLP 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01714 83 SUPERFAMILY PAH2 domain 12 83 IPR036600 GO:0006355
Vivi2g01714 83 Pfam Paired amphipathic helix repeat 39 82 IPR003822 GO:0006355
Vivi2g01714 83 PANTHER SIN3B-RELATED 13 83 IPR039774 GO:0003714
Vivi2g01714 83 FunFam Paired amphipathic helix SIN3-like protein 12 83 - -
Vivi2g01714 83 ProSiteProfiles PAH domain profile. 11 83 IPR003822 GO:0006355
Vivi2g01714 83 Gene3D Paired amphipathic helix 20 83 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01714 Vivi-Chr2 79126147 79126849 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g01714 PAH 1.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01714 - K11644 vvo:131649417 120.938