Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01713 ATGGCATTTGCAAACTACAAAATGAAGGGATCAAGTTCAAAAGCAGAAGTAACAATTGATGACGCCAAGATTTATATCCAAGAAATAAAAGATGCATTTAAAGATGATAGGGATAAGTTAAATGAGTTTTCAAAGACTATGAAAGATATCAAAAATGGAAGGGGTGACTTAGTGTGTATGCTGGCAAGAGTAAAGGAATTGTTTGAAGGGCATAGAGAATTGTTATTGAAGTTTAATGCCTATTTACCAAATGAATTTGCGATTACACCTCCACCAAAAAAACCAAAAGTGAATCTAGAATATGCCAGGAAATATTTAATCAAGGTGAAGACTCGATTTCAAGATGATCATGACGTTTACAAGTCATTTCTAGCTATAATGAATATGTATAGAAAGAAAGAAAAAAGTGGTGAAGAGATTCAACGAATGGTTATTTCACTTTTTAAAGATCAACCTGATCTTATTGACGGGTTTAATGAGTTTCTTCCATGA 492 0.3252 MAFANYKMKGSSSKAEVTIDDAKIYIQEIKDAFKDDRDKLNEFSKTMKDIKNGRGDLVCMLARVKELFEGHRELLLKFNAYLPNEFAITPPPKKPKVNLEYARKYLIKVKTRFQDDHDVYKSFLAIMNMYRKKEKSGEEIQRMVISLFKDQPDLIDGFNEFLP 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01713 163 FunFam Paired amphipathic helix SIN3-like protein 94 163 - -
Vivi2g01713 163 FunFam Paired amphipathic helix protein Sin3 21 83 - -
Vivi2g01713 163 SUPERFAMILY PAH2 domain 13 84 IPR036600 GO:0006355
Vivi2g01713 163 Pfam Paired amphipathic helix repeat 118 162 IPR003822 GO:0006355
Vivi2g01713 163 Pfam Paired amphipathic helix repeat 41 82 IPR003822 GO:0006355
Vivi2g01713 163 ProSiteProfiles PAH domain profile. 95 163 IPR003822 GO:0006355
Vivi2g01713 163 ProSiteProfiles PAH domain profile. 15 85 IPR003822 GO:0006355
Vivi2g01713 163 PANTHER SIN3B-RELATED 17 163 IPR039774 GO:0003714
Vivi2g01713 163 SUPERFAMILY PAH2 domain 91 163 IPR036600 GO:0006355
Vivi2g01713 163 Gene3D Paired amphipathic helix 21 83 IPR036600 GO:0006355
Vivi2g01713 163 Gene3D Paired amphipathic helix 102 163 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01713 Vivi-Chr2 79035721 79036509 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01713 8 134 WRKY Transcription Factor Family AT4G12020 31.496 3.95e-13 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g01713 PAH 2.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01713 K11644 - vvo:131646330 220.705