Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01711 ATGGCATTTGCAAACTACAAAATGAAGGGATCAAGTTCAAAAGCAGGACCAACAATTGATGACGCCAAGATTTATATCCAAGAAATAAAAGATGCATTTAAAGATGATAAGGATAAGTTCAACGAGTTTTCAAAGACTATGAAAGATATCAAAAATGGAAGGGGTGACTTAGTGTGTATGCTGGCAAGAGTAAAGGAATTGTTTGAAGGGCATAGAGAATTGTTATTGAAATTTAATGCCTATTTACCAAATGAATTTGCGATTACACCTCCACCAAGAAAGCCAAAAGTCAATCTAGAATATGCCAGGAAATATTTAATCAAGGTGAAGACTCGATTTCAAGATGATCAAGACGTTTACAAGTCGTTTCTAGCTATAATGAATATGTATAGAAAGAAAGAAAAAAGTGGTGAAGAGATTCAACGAATGGTTATTTCACTTTTTAAAGATCAACCTGATCTTATTGACGGGTTTAATGAGTTTCTTCCTTGA 492 0.3354 MAFANYKMKGSSSKAGPTIDDAKIYIQEIKDAFKDDKDKFNEFSKTMKDIKNGRGDLVCMLARVKELFEGHRELLLKFNAYLPNEFAITPPPRKPKVNLEYARKYLIKVKTRFQDDQDVYKSFLAIMNMYRKKEKSGEEIQRMVISLFKDQPDLIDGFNEFLP 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01711 163 Pfam Paired amphipathic helix repeat 118 162 IPR003822 GO:0006355
Vivi2g01711 163 Pfam Paired amphipathic helix repeat 38 82 IPR003822 GO:0006355
Vivi2g01711 163 Gene3D Paired amphipathic helix 21 83 IPR036600 GO:0006355
Vivi2g01711 163 Gene3D Paired amphipathic helix 102 163 IPR036600 GO:0006355
Vivi2g01711 163 PANTHER SIN3B-RELATED 17 163 IPR039774 GO:0003714
Vivi2g01711 163 ProSiteProfiles PAH domain profile. 93 163 IPR003822 GO:0006355
Vivi2g01711 163 FunFam Paired amphipathic helix protein Sin3 21 83 - -
Vivi2g01711 163 ProSiteProfiles PAH domain profile. 15 85 IPR003822 GO:0006355
Vivi2g01711 163 FunFam Paired amphipathic helix SIN3-like protein 94 163 - -
Vivi2g01711 163 SUPERFAMILY PAH2 domain 14 84 IPR036600 GO:0006355
Vivi2g01711 163 SUPERFAMILY PAH2 domain 91 163 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01711 Vivi-Chr2 78971849 78972616 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01711 8 134 WRKY Transcription Factor Family AT4G12020 31.496 2.06e-13 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g01711 PAH 9.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01711 K11644 - vvo:131646330 210.305