Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01709 ATGTGGTGTGTGAAAAGTGGCGAGTTTGAGAAATTTTACAGCTTTTCTCTAGTTTTGTTAGGGTTTAGAATTAGCATCCTAACAGAAGGGCATAGAGAATTGTTATTGAAATTTAATGCGTATTTACCAAATGAATTTGCGTTTACACCTCCACCAAGAAAGCCAAAAGTCAATCTAGAATATGCAAGGAAATATTTAATCAAGGTGAAGACTCGATTTCAAGATGATCATGACGTTTACAAGTCGTTTCTAGCTATAATGAATATGTATAGAAAGAAAGAAAAAAGTGGTGAAGAGATTCAACTAATGGTTATTTCACTTTTTAAAGATCAACCTGATCTTATAGACGGGTTTAATGAATTTCTTCCTTGA 372 0.328 MWCVKSGEFEKFYSFSLVLLGFRISILTEGHRELLLKFNAYLPNEFAFTPPPRKPKVNLEYARKYLIKVKTRFQDDHDVYKSFLAIMNMYRKKEKSGEEIQLMVISLFKDQPDLIDGFNEFLP 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01709 123 PANTHER SIN3B-RELATED 23 123 IPR039774 GO:0003714
Vivi2g01709 123 FunFam Paired amphipathic helix SIN3-like protein 54 123 - -
Vivi2g01709 123 Pfam Paired amphipathic helix repeat 78 122 IPR003822 GO:0006355
Vivi2g01709 123 Gene3D Paired amphipathic helix 62 123 IPR036600 GO:0006355
Vivi2g01709 123 SUPERFAMILY PAH2 domain 51 123 IPR036600 GO:0006355
Vivi2g01709 123 ProSiteProfiles PAH domain profile. 53 123 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01709 Vivi-Chr2 78919847 78921056 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g01709 PAH 4.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01709 K11644 - vvo:131649425 253.447