LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi2g01707	ATGAAAGATTATCAGATTAGAAGAATTGATATCAAGGGTATGGTAGCTAGAGTGGAGAAATTGTTTAAAAGACATGAAGATTTATTATTGAAATTTAACAATTTTTTGCCAAATGAATTTGAAATTAATCCTCCACCAAAAAAACCAAATACCCAAGTAGTAGATAAAGAGGACGCTAAAAATTACTTGGCTAAAGTGAAGATTCGATTTCAAAGTCAACCTTATGTGTACGATTTGTTTCTGGACATAATGAGTATGTTCAAAAACAAAGACAAAAACCTTGACGAAATGTATGAAATGGTTGTTTCACTCTTAGAAGATCATCCTGATCTTATTGATGGATTTACTGATTTTCTTCCATAA	363	0.303	MKDYQIRRIDIKGMVARVEKLFKRHEDLLLKFNNFLPNEFEINPPPKKPNTQVVDKEDAKNYLAKVKIRFQSQPYVYDLFLDIMSMFKNKDKNLDEMYEMVVSLLEDHPDLIDGFTDFLP	120

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi2g01707	120	Gene3D	Paired amphipathic helix	1	37	IPR036600	GO:0006355
	Vivi2g01707	120	Gene3D	Paired amphipathic helix	58	120	IPR036600	GO:0006355
	Vivi2g01707	120	ProSiteProfiles	PAH domain profile.	47	120	IPR003822	GO:0006355
	Vivi2g01707	120	SUPERFAMILY	PAH2 domain	50	120	IPR036600	GO:0006355
	Vivi2g01707	120	PANTHER	SIN3B-RELATED	1	120	IPR039774	GO:0003714
	Vivi2g01707	120	SUPERFAMILY	PAH2 domain	1	38	IPR036600	GO:0006355
	Vivi2g01707	120	ProSiteProfiles	PAH domain profile.	1	39	IPR003822	GO:0006355
	Vivi2g01707	120	Pfam	Paired amphipathic helix repeat	76	119	IPR003822	GO:0006355
	Vivi2g01707	120	Pfam	Paired amphipathic helix repeat	1	36	IPR003822	GO:0006355
	Vivi2g01707	120	FunFam	Paired amphipathic helix SIN3-like protein	51	120	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi2g01707	Vivi-Chr2	78705774	78706520	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi2g01707	1	47	WRKY Transcription Factor Family	AT4G12020	40.426	3.37e-07	45.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Others	Vivi2g01707		PAH	1.6e-14	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi2g01707	K11644		-	vvo:131649421	247.284