Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01706 ATGGCAAAGAAAAGTAAGGGAGCAGGAACAAAGAAACCAGTAATCAATGAAGATGCCAATATGTATCTCAAAGAAATAAAAGATGCATTTAAAGACGAGAAATACAAGTACCGTGAATTTCTAAGAGTTATGAAAGATTTTCAGATAAGAAGAATTGATATAAAGGGAGTGATGGCAAGAGTGGAAAAGTTGTTTCAAAGGCACAAAGAATTGTTATTGAAATTCAATAAATTTTTACCAGATGGATTTGAAATCAAATATCCACCTAAGAAAGCAAAAATACCAGTAATGAGTATAGAAGATGCTAAAAACTATTTGGGCAAGGTGAAGATTCGATTTCAATGTCAACTTTATGTATATGATTTGTTTTTAGACATAATGAGTATGTACAAAAATAAAGAAAAGAACCTCGAGGAGATTTATAAAATGGTTACTTCACTTTTTAAAGATCACCCTGATCTTATTGATGGATTTATGATTTTTCTTCCATAA 492 0.3008 MAKKSKGAGTKKPVINEDANMYLKEIKDAFKDEKYKYREFLRVMKDFQIRRIDIKGVMARVEKLFQRHKELLLKFNKFLPDGFEIKYPPKKAKIPVMSIEDAKNYLGKVKIRFQCQLYVYDLFLDIMSMYKNKEKNLEEIYKMVTSLFKDHPDLIDGFMIFLP 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01706 163 Pfam Paired amphipathic helix repeat 119 162 IPR003822 GO:0006355
Vivi2g01706 163 Pfam Paired amphipathic helix repeat 36 79 IPR003822 GO:0006355
Vivi2g01706 163 Gene3D Paired amphipathic helix 18 80 IPR036600 GO:0006355
Vivi2g01706 163 Gene3D Paired amphipathic helix 101 163 IPR036600 GO:0006355
Vivi2g01706 163 ProSiteProfiles PAH domain profile. 12 82 IPR003822 GO:0006355
Vivi2g01706 163 ProSiteProfiles PAH domain profile. 90 163 IPR003822 GO:0006355
Vivi2g01706 163 FunFam Paired amphipathic helix protein Sin3 18 80 - -
Vivi2g01706 163 SUPERFAMILY PAH2 domain 11 81 IPR036600 GO:0006355
Vivi2g01706 163 PANTHER SIN3B-RELATED 15 163 IPR039774 GO:0003714
Vivi2g01706 163 SUPERFAMILY PAH2 domain 98 163 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01706 Vivi-Chr2 78676176 78677320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01706 7 90 WRKY Transcription Factor Family AT4G12020 40.476 1.87e-13 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g01706 PAH 2.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01706 K11644 - vvo:131649399 247.284