Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01702 ATGGTTGGGAGGAATGATGCTGCGATAGCTACTGCTTTGGAAGCAACGGCTCAAGCGTTAGAGAACCAACCGAATGGTGGTGAGAATGCTGCTTCTCTGAGTTTGGCTACCTTCCAAAAAGAGAACCCTCATAATGTTCAGTATGGGACTCATATGCTAGTAGTTGAGGCAGATGATTGGTGGCTAGAGAACCGTAGGAGATTGGAAGCAAGTGGCGAGGAGATATCTTGGATTGTGTTTCACATGGAGTTCTTGAGGAAGTACTTTCATGAAGATGTCCGTGGCAAGAAGGAAATTGAACTCCTTGAGCTAAGTGAAAGGAACAAATCTATTGTGGAGTATGCTGCTAAGATTGGTGAGTTGGAAAAGTTTTACCAACACTATGATGGGCCGAATGGCGAGTTTTCCAAGTGCATTAAGTTTGAGAATGGTTTGCGTCAGGCGATTAAGAAGTTTGGACATGAAGCACCTGAATGTAAGCATAAGGAGATGGTTTGTTTCAATTGTGGTGAAGAAGGCCACATCGGAAGCGAGTGTCGGAAGCCCAAGAAGGAGCAATCTATTGGGAAGGTGTTCGCCTTGTTGGGAACTCAGACCACTAGTAAGGATTCACTCATCAGAGGTACATGTCTCATTAATAACATTCCTTTGATTACTATTATTGATATCGGTGCTAAGCAATGCTTTATATCTGTTGATTATGTTGAAAGATTGGGTCTTGTGTTATCTTTCATGAACGGAGAAATGGTTGTCAACACACTGGCTAAGGGTTTGGTGACTACTTCTCTTATGTGTCTAAAGTGTCTCGTGTCAATTGTGTTGAGAGGTTTAGATGTGATTTTGGGGATGAACTGGTTTTCTTCTCCTGAAGAGGAAAGCTTAGAGTTGTTATCGTCAAAACAGTTGTGTTTGTTAATGAAAGAAGATGTTCAAGTGTTCGCATTGGTTGCTTCGATGTCTGTTGAGAATCAGGTTGTGATAGAAAGGTTAAAGGTGGTATGTGAATTTCTTGAAGTTTTCCCTAATGAAATTCCCGATGTGCCGCCTGAGAGAGAAGCTAAGTTCTCTATTGATCTTGTACCTGGTACTAGACATGTGTCTATGAAGATGCAAGAAACAGGTGTTAAGAAGCCAACCGTGGATATAAAATATGCTGCGAAATTTGTGCGTAAGGTGGAGACTCGATTTCAACGTGTTCAGCAGTGTCATGTTTATCCATTGTTTCTGGACATCCTAAAATCATATACAGAAAACAAAAAAAGTCTTGATGATGTCATTATGGAGGTTAATTTTCTTTTCATAGGCCATGATGATCTGATTGACGACTTTACTAATTTTCTTCCTTGA 1347 0.4083 MVGRNDAAIATALEATAQALENQPNGGENAASLSLATFQKENPHNVQYGTHMLVVEADDWWLENRRRLEASGEEISWIVFHMEFLRKYFHEDVRGKKEIELLELSERNKSIVEYAAKIGELEKFYQHYDGPNGEFSKCIKFENGLRQAIKKFGHEAPECKHKEMVCFNCGEEGHIGSECRKPKKEQSIGKVFALLGTQTTSKDSLIRGTCLINNIPLITIIDIGAKQCFISVDYVERLGLVLSFMNGEMVVNTLAKGLVTTSLMCLKCLVSIVLRGLDVILGMNWFSSPEEESLELLSSKQLCLLMKEDVQVFALVASMSVENQVVIERLKVVCEFLEVFPNEIPDVPPEREAKFSIDLVPGTRHVSMKMQETGVKKPTVDIKYAAKFVRKVETRFQRVQQCHVYPLFLDILKSYTENKKSLDDVIMEVNFLFIGHDDLIDDFTNFLP 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01702 448 Pfam Zinc knuckle 165 181 IPR001878 GO:0003676|GO:0008270
Vivi2g01702 448 ProSiteProfiles Zinc finger CCHC-type profile. 166 181 IPR001878 GO:0003676|GO:0008270
Vivi2g01702 448 Pfam Retroviral aspartyl protease 189 289 - -
Vivi2g01702 448 PANTHER SIN3B-RELATED 278 448 IPR039774 GO:0003714
Vivi2g01702 448 Gene3D Acid Proteases 196 290 IPR021109 -
Vivi2g01702 448 Gene3D - 147 191 - -
Vivi2g01702 448 Gene3D Paired amphipathic helix 385 448 IPR036600 GO:0006355
Vivi2g01702 448 SMART c2hcfinal6 165 181 IPR001878 GO:0003676|GO:0008270
Vivi2g01702 448 ProSiteProfiles PAH domain profile. 376 448 IPR003822 GO:0006355
Vivi2g01702 448 Pfam Retrotransposon gag protein 56 146 IPR005162 -
Vivi2g01702 448 Pfam Paired amphipathic helix repeat 404 447 IPR003822 GO:0006355
Vivi2g01702 448 SUPERFAMILY PAH2 domain 375 448 IPR036600 GO:0006355
Vivi2g01702 448 SUPERFAMILY Retrovirus zinc finger-like domains 150 183 IPR036875 GO:0003676|GO:0008270
Vivi2g01702 448 CDD retropepsin_like 209 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01702 Vivi-Chr2 78446099 78509391 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g01702 RVP_2 1.4e-16 CL0129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01702 - - vvo:131649417 855.129