Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01699 ATGGCTTTTAAGAAAGCTGATGATGTTGGTCAAAGTATAGAAACATATGACGAAGAGCTGGAACAGAGTGTGAGGGAATCAGGTACAAAGAAACCTATAACAAGCGATGATGCACACATGTATCTAGAAGAAGTAAAGGATGCGTTTAAAGATGAGAAGTACAAGTACAGTGAATTTCTAAGGACCATGAAAGATTTCAATCTCAAAAGAATCGATGTTACGGATGTGGTGGCAAGAGTGGAGATATTGTTTAAGGGGCATGAAGAATTATTATTGAAATTTAATGACTTCTTGCCAGATGCATTTGAAATCAAATCTTCACCAAAGAAGCCAAGTATATCGGTAGTGAATAAAGAAGATGCTAACAAATATTTGGAAAAAGTGAAGAATCGCTTTCAACATCAACTTGATGTATACGATTCATTTCTAGACATCATGATTATGTACAAAAACAAAGATAAAAGCCTTGAAGAGATATATGACATGGTCATTTCACTTTTTGAAGACCATCATGATCTCGTTGATGGATTTACTATTTTTCTTCCATAA 549 0.3424 MAFKKADDVGQSIETYDEELEQSVRESGTKKPITSDDAHMYLEEVKDAFKDEKYKYSEFLRTMKDFNLKRIDVTDVVARVEILFKGHEELLLKFNDFLPDAFEIKSSPKKPSISVVNKEDANKYLEKVKNRFQHQLDVYDSFLDIMIMYKNKDKSLEEIYDMVISLFEDHHDLVDGFTIFLP 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01699 182 PANTHER SIN3B-RELATED 34 182 IPR039774 GO:0003714
Vivi2g01699 182 ProSiteProfiles PAH domain profile. 109 182 IPR003822 GO:0006355
Vivi2g01699 182 Pfam Paired amphipathic helix repeat 55 98 IPR003822 GO:0006355
Vivi2g01699 182 Pfam Paired amphipathic helix repeat 137 181 IPR003822 GO:0006355
Vivi2g01699 182 ProSiteProfiles PAH domain profile. 31 101 IPR003822 GO:0006355
Vivi2g01699 182 SUPERFAMILY PAH2 domain 117 182 IPR036600 GO:0006355
Vivi2g01699 182 SUPERFAMILY PAH2 domain 30 100 IPR036600 GO:0006355
Vivi2g01699 182 Gene3D Paired amphipathic helix 37 99 IPR036600 GO:0006355
Vivi2g01699 182 Gene3D Paired amphipathic helix 120 182 IPR036600 GO:0006355
Vivi2g01699 182 FunFam Paired amphipathic helix SIN3-like protein 114 182 - -
Vivi2g01699 182 FunFam Paired amphipathic helix protein Sin3 37 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01699 Vivi-Chr2 78215463 78232374 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01699 28 109 WRKY Transcription Factor Family AT4G12020 40.244 1.96e-13 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g01699 PAH 4.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01699 K11644 - vvo:131649408 217.238