Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01693 ATGGTTGTTAGATCATTAGATATAGAGAAAGATCCGTTCATGCCTCGAGAAAGGGATGAAAATTTGGCCGGTGCTGAAGTACCATTTCTCGGTGCAAATGGAGCACTAATGGGATCAACTACAAGAAAATCAATAACCAACGATGATGCAAACATGTATCTGAAAGAAATAAATGAGGCATTTAAAAATGAGAAGTATAAGTATAATGAATATCTAAGGGCCATGAAGGATTTTCAGATAAAGAGAATTGATATAGAGGGATTGATGGCTAGAGTGGAGAAATTATTCAATGGCCACAAGGAATTGTTATTGAAATTTAATAACTTTTTACCAGATGGATTTGAAATTAAAACTCCATCGAAGAAGCCAAATATTCCAATAGTGAAAAAAGAAGATGTTCAAAAATATTTGGAAAAGGTGAAGATTCGATTTTCACGTCAACCTATTGTTTATGATATGTTTCTAGACATAATAAATATGTATAAAAACAAATATAAGAGCCTTGAGGAGATTTATGAAATGGTTATTTCACTTTTTGAAGACCACCCAGATCTTATCGATGAATTTACTGAATTTCTTCTATAA 585 0.3197 MVVRSLDIEKDPFMPRERDENLAGAEVPFLGANGALMGSTTRKSITNDDANMYLKEINEAFKNEKYKYNEYLRAMKDFQIKRIDIEGLMARVEKLFNGHKELLLKFNNFLPDGFEIKTPSKKPNIPIVKKEDVQKYLEKVKIRFSRQPIVYDMFLDIINMYKNKYKSLEEIYEMVISLFEDHPDLIDEFTEFLL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01693 194 ProSiteProfiles PAH domain profile. 125 194 IPR003822 GO:0006355
Vivi2g01693 194 Gene3D Paired amphipathic helix 132 193 IPR036600 GO:0006355
Vivi2g01693 194 Gene3D Paired amphipathic helix 49 111 IPR036600 GO:0006355
Vivi2g01693 194 PANTHER SIN3B-RELATED 46 193 IPR039774 GO:0003714
Vivi2g01693 194 FunFam Paired amphipathic helix SIN3-like protein 126 194 - -
Vivi2g01693 194 SUPERFAMILY PAH2 domain 130 193 IPR036600 GO:0006355
Vivi2g01693 194 FunFam Paired amphipathic helix protein Sin3 49 111 - -
Vivi2g01693 194 SUPERFAMILY PAH2 domain 41 112 IPR036600 GO:0006355
Vivi2g01693 194 ProSiteProfiles PAH domain profile. 42 113 IPR003822 GO:0006355
Vivi2g01693 194 Pfam Paired amphipathic helix repeat 67 110 IPR003822 GO:0006355
Vivi2g01693 194 Pfam Paired amphipathic helix repeat 150 193 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01693 Vivi-Chr2 77723770 77727413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01693 38 141 WRKY Transcription Factor Family AT4G12020 32.381 1.26e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g01693 PAH 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01693 K11644 - vvo:131649408 389.808