Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01689 ATGGAGCAGTGTATTAAAAATGCCATAGAATTTCTCACAGAAATAAAGGGTAGATTTACTCAAGATAAGTATGATGAGTTTCTGACAGTCTTCATGGATTATATGGCAGAAAGGATTGAGTTTATTGATGTCATGGACAAAATGAAGGAAATATTAAAAGATCACAGAGATTTGATATTGAGATTAAACACCTTCATGCCAACTGGATATGAAATCAAACTTCCATTGGAAGATGAACAATCTCAACCAAAGAAGCGTGTTAAATTGGAAGATGCTACACGGTTTTTGAATAAGATAAAGGCTCGGTTTGAAGGAGATGATGACCATATTTACAAATCATTTATGAAGATATTAATTATGTACCATAACAAAAATAAGTCTTTCACTATGGTCTGCCAAGAGGCTACTACACTTTTGCAAGGCTATCCTGATCTTCTTGATGAATTTTATGATTTTCTTCCCAAATCTATTTCTGCTCATTATGTAGCTGCTCGGAATTCTTTGCATGGTGATACGTAG 519 0.3391 MEQCIKNAIEFLTEIKGRFTQDKYDEFLTVFMDYMAERIEFIDVMDKMKEILKDHRDLILRLNTFMPTGYEIKLPLEDEQSQPKKRVKLEDATRFLNKIKARFEGDDDHIYKSFMKILIMYHNKNKSFTMVCQEATTLLQGYPDLLDEFYDFLPKSISAHYVAARNSLHGDT 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01689 172 FunFam Paired amphipathic helix SIN3-like protein 84 156 - -
Vivi2g01689 172 ProSiteProfiles PAH domain profile. 85 156 IPR003822 GO:0006355
Vivi2g01689 172 Pfam Paired amphipathic helix repeat 109 153 IPR003822 GO:0006355
Vivi2g01689 172 Pfam Paired amphipathic helix repeat 22 65 IPR003822 GO:0006355
Vivi2g01689 172 Gene3D Paired amphipathic helix 7 67 IPR036600 GO:0006355
Vivi2g01689 172 Gene3D Paired amphipathic helix 84 156 IPR036600 GO:0006355
Vivi2g01689 172 SUPERFAMILY PAH2 domain 5 68 IPR036600 GO:0006355
Vivi2g01689 172 SUPERFAMILY PAH2 domain 83 155 IPR036600 GO:0006355
Vivi2g01689 172 ProSiteProfiles PAH domain profile. 1 69 IPR003822 GO:0006355
Vivi2g01689 172 PANTHER SIN3B-RELATED 4 158 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01689 Vivi-Chr2 77104715 77105729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01689 7 79 WRKY Transcription Factor Family AT4G12020 32.432 4.48e-08 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g01689 PAH 9.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01689 K11644 - psat:127121396 222.246