Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01677 ATGGGGAGTTCAAGTACAATAAAATCATTAACCACTGAAGATGCCAATATGTATCTGAAAGAAATAAAAATTGCGTTTAAAGATGAAATGTACAAGTACCATGAATTTCTTAGAACCATGAAAGATTTTCAGATAAGAAGAATTGACATAACAGGTGTGATGGCAAGAGTTGAGAAATTATTTCAAAGGCACGAAGAATTACTATTTAAATTTAGTATGTTTTTGCCTGATGGATTTGAAATGAAACCTCCACCAAAAAAGTCTAAGATACCAGTCGTGAGTGTGAGTAAAGAAGATGCTAAAGAATATTTGGGCAAGGTGAAGACTCGATTTCAAAGTCAACTTTACGTATATGATATATTTCTAGCCATAATGAGTATGTACAGAAATAAAGATAAGAGTCTTGAGGAGATCTATGAAATGGTTGTTTCAATTTTTAAGGATCACCCTGATCTTATTGATGGATTTATGAATTTTCTTCCATAA 486 0.3169 MGSSSTIKSLTTEDANMYLKEIKIAFKDEMYKYHEFLRTMKDFQIRRIDITGVMARVEKLFQRHEELLFKFSMFLPDGFEMKPPPKKSKIPVVSVSKEDAKEYLGKVKTRFQSQLYVYDIFLAIMSMYRNKDKSLEEIYEMVVSIFKDHPDLIDGFMNFLP 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01677 161 PANTHER SIN3B-RELATED 10 161 IPR039774 GO:0003714
Vivi2g01677 161 FunFam Paired amphipathic helix protein Sin3 14 76 - -
Vivi2g01677 161 SUPERFAMILY PAH2 domain 8 77 IPR036600 GO:0006355
Vivi2g01677 161 FunFam Paired amphipathic helix SIN3-like protein 93 161 - -
Vivi2g01677 161 ProSiteProfiles PAH domain profile. 8 78 IPR003822 GO:0006355
Vivi2g01677 161 ProSiteProfiles PAH domain profile. 93 161 IPR003822 GO:0006355
Vivi2g01677 161 Pfam Paired amphipathic helix repeat 32 75 IPR003822 GO:0006355
Vivi2g01677 161 Pfam Paired amphipathic helix repeat 117 160 IPR003822 GO:0006355
Vivi2g01677 161 Gene3D Paired amphipathic helix 14 76 IPR036600 GO:0006355
Vivi2g01677 161 Gene3D Paired amphipathic helix 99 161 IPR036600 GO:0006355
Vivi2g01677 161 SUPERFAMILY PAH2 domain 95 161 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01677 Vivi-Chr2 76558195 76558963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01677 10 86 WRKY Transcription Factor Family AT4G12020 36.364 4.80e-10 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g01677 PAH 5.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01677 K11644 - vvo:131649399 305.064