Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01663 ATGAAGCGGTCACGAGAGGAGAGTTTCATGACTTCTTCTTCTCAGCTTAAACGACCTATGTTATCTTCTAGAGGAGAAGCGTCCGGGCAACCCCTGATGGTTAATGGAGGTGGTCAAAAACTGACTACTAATGATGCCTTATCATATCTCAAGGCAGTAAAGGATATTTTTCAAGATAAGAGGGATAAATATGAAGATTTTTTGGAGGTCATGAAAGATTTTAAAGCACAAAGAATTGATACTGCTGGTGTCATAGCAAGAGTGAAGGATCTTTTTAGAGGTCATAGAGATTTAATTTTGGGATTTAACACATTTTTGCCAAAGGGGTATGAAATCACCCTTCCGATGGAGGATGATCAACCTCACTCAAAAAAGCCTGTTGAATTTGTAGAAGCTATGAGTTTTGTGAACAAGATAAAGACTCGATTTCACGGTGATGATCATATTTACAAGGCATTTCTAGACATATTGAATATGTACAGAAAGGAGAATAAGTCTATCGACGCGGTCTACCAGGAGGTTGCTGCACTCTTCCAAGACCACCCAGATCTTCTCGATGGGTTTATTCATTTTCTTCCCGACGTTTCCGCAGCTGCCTCTGCTCATACTGTTGCTCGGAATTCTAGCTTTCGAGATAGGAGCTCTGCAATGCCAACAGTGCGGCAAATGCATGTTGAAAAGAGAGAAAGGACCATTGTTTCACATGGTGACCGTGACACCAGTGTTGACCGTCCTGACCCAGATCATGACAGAAATTTGTTGAGGGCAGAAAAGGAGCATAAGAGACGCGTGGAGAAGGAAAAGGACCGTAGAGAAGATAGAGACAAGAGAAAACGAGAACGAAATGATAGAGATGATCAGGGAAGGGGTCGAGATAGGGAGCGGTTATCCCACAAACAAAAATTCGATCATATGGCTGAAGACTCAGGAGCTGAACCATTGCTTGATGCAGATCAAAATTCTGGTGTTTATAGTCAAGAGTTAGCTTTCTGTGATAAAGTCAAAGAGAGATTACGAAATCCTGACAGCTACCAAGAATTTTTGAAGTGTTTACATATTTACAGCCGGGAAATTATTACTCGACAAGAATTGCAGTCTCTGGTGGGTGATTTATTGGGAAAGTATCCAGATCTTATGGAAGGGTTTAATGAATTTTTGCTACAAGCTGAGAAAAATGATGGTGGATTCCTTGCTGGTGTCATGAATAAGAAGTCCTTATGGATTGAAGGACATGGACTGAAACCAATGAAGGCTGGACAGAGAGATAGGGATCATGATAAAGATCGTTACAGGGATGATAGTTTGAAAGAAAGGGATCGTGAATTCCGAGAAAGGGATAAATCTTCTGTGATTTCCAACAAGGATGTTTCAGGTTCTAAGATGTCTCTATATCCCAGCAAGGATAAGTATCTCTCTAAACCAATAAATGAGCTGGACCTTTCTAATTGTGAACGATGCACTCCCAGTTACCGTCTCCTACCAAAAAATTATCCAATACCTATTGCTAGCCAGAAAACAGAAATTGGCGCTGAAGTGTTGAATGATCACTGGGTGTCTGTCACTTCAGGAAGTGAGGATTATTCCTTTAAACATATGCGCAAAAATCAATATGAAGAGAGTTTGTTTAGATGTGAAGATGACAGGTTTGAGCTTGATATGTTGTTAGAATCTGTAAATGTGACAACTAAACGAGTACAAGAATTGTTAGAAAAGATCCACAAAAATCTACTTGAAGGAGACAGCCCGATTCGTATTGAGGAGCACTTAACAGCTCTAAACTTTAGGTGTATTGAACGAATATATGGTGACCATGGTCTTGATGTGTTGGAAGTGCTAAAGAAGAATGCATCTCTAGCTTTGCCAGTGATACTAACACGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGATGTCGTGCTGATTTCAGTAAAGTTTGGGCTGAAATATATGCCAAGAATTATCACAAATCTCTTGATCATCGCAGCTTCTACTTTAAGCAACAGGACACAAAAAGCTTGAGCACCAAAGCCCTACTGTCCGAAATCAAAGAAATCAGTGAGAAGAAACACAAAGAAGACGATGTTCTTCTTGCAATTGCTGCGGGAAATAGACGGCCTATTCTTCCAAACCTAGAGTTTGAATATCTTGATACAGACATCCATGAAGACTTGTATCAGCTTATAAAATATTCATGTGGAGAAGTTTGCACAACTGAACAGTTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAACCCATGCTTTGTGTACCTTGTCGGCCCCAGGGTGCTGAGGATACTGAAGATGCTGTGGCTAAGAATAGTTCTAGGAGAAATGTTGCTGAGAGTGATGGTAGTCCTGGTGTTGGTGCCACCATAATGAGCCCAAAGCATATAGATACTTCTAGAAATGGTGATAACCGTGTGCCGTTAGATCAGTCAACTTCTAGCATAGCATGGCAGTCAAATGGTGATACTGGGATTAGAGAAGATAAATGTCTTGATTCAGACTGTACTGTGCCTGAACGTGAAGCTTTTTGCAGTAATCCGCAAAACGGTAAACCGAATATAATTGCATCCGTGCCTAGTGAGCTATCAGGAGTCAATAAGCAAGATCTCTCTGGTGAGCGGTTACTGAACGATAATGTCTCACCATCATCTGGAATGGAGCTAAGTAATAAAAGAATGAAGATAGATAATGCATCAGGACTTGCTGCTACTCTATCTAGAAATGATAATGTTTCTGTCACGGGAGGACATGAATTACCTTCATCACAGGGTGGTGATTCTGCCAGAGCAGGTACTTCCATAAATGGGGCCATCGCTGGAGGCACTGATGTTTGCAGATATCAAGAGGAATCAAATCGACAGTTCAAAAGCGAAAGAGAAGAGGGTGAGTTATCTCCAAATGGAGACTTTGAAGAGGATAATTCTGCAGTTTATGGAGATGCTGGTTTGGATGTAGTGCATAAAGGAAAGGATGGTGGTGTGAATCGGCAATACCAAAATAGGCCTGGGGAAGAAGTTTGTGGTGAAGCCAGACGAGAAAATTATGCGGATGCTGATGATGAAGGCGAAGAAAGTCCTCAGATGTCCTCAGAGGACAGTGAAAATGCTTCTGAAAATGTTGATGTGTCTGGAAGTGAATCTGCTGACGGTGAGGAGTGTTCTCAAGAAGAGCATGAGGATGGAGAACATGATAGTAAGGCAGAAAGTGAAGGTGAAGCTGAAGTTGTGGCTGATGTGCATGATGTTGAAGGAGATGGAACGTCATTACCATTTTCTGAACGCTTTCTTCTAAACGTGAAGCCATTGACGAAGCATGTTCCCTCAGTGCTACATGTGAAAGACAGGAATTCTAAAGTTTTTTATGGAAGTGACTCCTTTTATGTGCTGATTAGACTTCATCAGACATTGTATGAGAGAATACAATCAGCAAAGGTTAACTCATCATCAGCTGAAAGGAAATGGAGGGCTTCAAATGATACAAGCTCTACTAATCAATATGACAGGTTCATGAATGCGCTTTACAGTTTGCTGGATGGATCTTCTGACAATACAAAATTTGAGGATGATTGTCGAGCTATTATTGGAACTCAATCATATCTCTTATTCACGTTAGACAAACTGATATATAAACTTGTTAAACAGCTTCAGGCTGTTGCGAACGATGAGATGGATAATAAGCTTCTTCAACTAAATACATATGAGAAGTCAAGAAAACTTGGAAAGTTTTTCGATGTAGTTTATCATGAAAATGCTCGCTTTCTTCTTCATGATGAGAACATATATCGTATTGAATTTTCACCAAAACCAAAGACACTGTCTATTCAACTTATGGACTGTGGAAATGTAAAACATGAAGCGACTGCTGTGTCAGTGGACCCAAACTTTTCAGCCTATCTGCTTAATGAATTCCTCTCCGTTGTCCCAGACCAAAAGACATCGGGGATTTTCTTGAAAAGGAGTAAACGTGGATATGCCGTTAATGATGAGTTGTCAAGCCAGGTTACGGAAGGACTACAAATTATTAATGGTCTGGAGTGTAAGATAGCTAGCAATTCTTCTAAGGTGTCGTATGTTTTAGATACCGAAGACTTCATGTTTCGGATGAGAAGCAGAAGAAAAGCTTTGCGTCTGAAGCGTGAACAAGAAAATTCTTCAAACATTCGTTCAAGCAGAACAGCAAGGTTCCGCAAAATGTTTTCCTTCACTTGA 4218 0.4054 MKRSREESFMTSSSQLKRPMLSSRGEASGQPLMVNGGGQKLTTNDALSYLKAVKDIFQDKRDKYEDFLEVMKDFKAQRIDTAGVIARVKDLFRGHRDLILGFNTFLPKGYEITLPMEDDQPHSKKPVEFVEAMSFVNKIKTRFHGDDHIYKAFLDILNMYRKENKSIDAVYQEVAALFQDHPDLLDGFIHFLPDVSAAASAHTVARNSSFRDRSSAMPTVRQMHVEKRERTIVSHGDRDTSVDRPDPDHDRNLLRAEKEHKRRVEKEKDRREDRDKRKRERNDRDDQGRGRDRERLSHKQKFDHMAEDSGAEPLLDADQNSGVYSQELAFCDKVKERLRNPDSYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLMEGFNEFLLQAEKNDGGFLAGVMNKKSLWIEGHGLKPMKAGQRDRDHDKDRYRDDSLKERDREFRERDKSSVISNKDVSGSKMSLYPSKDKYLSKPINELDLSNCERCTPSYRLLPKNYPIPIASQKTEIGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVQELLEKIHKNLLEGDSPIRIEEHLTALNFRCIERIYGDHGLDVLEVLKKNASLALPVILTRLKQKQEEWARCRADFSKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLSEIKEISEKKHKEDDVLLAIAAGNRRPILPNLEFEYLDTDIHEDLYQLIKYSCGEVCTTEQLDKVMKVWTTFLEPMLCVPCRPQGAEDTEDAVAKNSSRRNVAESDGSPGVGATIMSPKHIDTSRNGDNRVPLDQSTSSIAWQSNGDTGIREDKCLDSDCTVPEREAFCSNPQNGKPNIIASVPSELSGVNKQDLSGERLLNDNVSPSSGMELSNKRMKIDNASGLAATLSRNDNVSVTGGHELPSSQGGDSARAGTSINGAIAGGTDVCRYQEESNRQFKSEREEGELSPNGDFEEDNSAVYGDAGLDVVHKGKDGGVNRQYQNRPGEEVCGEARRENYADADDEGEESPQMSSEDSENASENVDVSGSESADGEECSQEEHEDGEHDSKAESEGEAEVVADVHDVEGDGTSLPFSERFLLNVKPLTKHVPSVLHVKDRNSKVFYGSDSFYVLIRLHQTLYERIQSAKVNSSSAERKWRASNDTSSTNQYDRFMNALYSLLDGSSDNTKFEDDCRAIIGTQSYLLFTLDKLIYKLVKQLQAVANDEMDNKLLQLNTYEKSRKLGKFFDVVYHENARFLLHDENIYRIEFSPKPKTLSIQLMDCGNVKHEATAVSVDPNFSAYLLNEFLSVVPDQKTSGIFLKRSKRGYAVNDELSSQVTEGLQIINGLECKIASNSSKVSYVLDTEDFMFRMRSRRKALRLKREQENSSNIRSSRTARFRKMFSFT 1405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01663 1405 MobiDBLite consensus disorder prediction 416 455 - -
Vivi2g01663 1405 MobiDBLite consensus disorder prediction 914 933 - -
Vivi2g01663 1405 ProSiteProfiles PAH domain profile. 39 109 IPR003822 GO:0006355
Vivi2g01663 1405 Gene3D Paired amphipathic helix 320 390 IPR036600 GO:0006355
Vivi2g01663 1405 Pfam Sin3 family co-repressor 484 575 IPR013194 -
Vivi2g01663 1405 FunFam Paired amphipathic helix SIN3-like protein 124 195 - -
Vivi2g01663 1405 MobiDBLite consensus disorder prediction 767 826 - -
Vivi2g01663 1405 MobiDBLite consensus disorder prediction 914 938 - -
Vivi2g01663 1405 MobiDBLite consensus disorder prediction 206 317 - -
Vivi2g01663 1405 Gene3D Paired amphipathic helix 123 195 IPR036600 GO:0006355
Vivi2g01663 1405 Pfam C-terminal domain of Sin3a protein 1123 1368 IPR031693 -
Vivi2g01663 1405 Gene3D Paired amphipathic helix 45 107 IPR036600 GO:0006355
Vivi2g01663 1405 MobiDBLite consensus disorder prediction 416 451 - -
Vivi2g01663 1405 ProSiteProfiles PAH domain profile. 125 195 IPR003822 GO:0006355
Vivi2g01663 1405 MobiDBLite consensus disorder prediction 953 978 - -
Vivi2g01663 1405 Coils Coil 254 274 - -
Vivi2g01663 1405 MobiDBLite consensus disorder prediction 1 37 - -
Vivi2g01663 1405 SUPERFAMILY PAH2 domain 124 194 IPR036600 GO:0006355
Vivi2g01663 1405 SUPERFAMILY PAH2 domain 324 388 IPR036600 GO:0006355
Vivi2g01663 1405 Pfam Paired amphipathic helix repeat 342 386 IPR003822 GO:0006355
Vivi2g01663 1405 Pfam Paired amphipathic helix repeat 148 192 IPR003822 GO:0006355
Vivi2g01663 1405 Pfam Paired amphipathic helix repeat 62 106 IPR003822 GO:0006355
Vivi2g01663 1405 MobiDBLite consensus disorder prediction 953 967 - -
Vivi2g01663 1405 ProSiteProfiles PAH domain profile. 319 389 IPR003822 GO:0006355
Vivi2g01663 1405 PANTHER SIN3B-RELATED 39 1267 IPR039774 GO:0003714
Vivi2g01663 1405 MobiDBLite consensus disorder prediction 806 824 - -
Vivi2g01663 1405 FunFam Paired amphipathic helix protein SIN3 318 391 - -
Vivi2g01663 1405 MobiDBLite consensus disorder prediction 222 311 - -
Vivi2g01663 1405 MobiDBLite consensus disorder prediction 1062 1076 - -
Vivi2g01663 1405 MobiDBLite consensus disorder prediction 991 1076 - -
Vivi2g01663 1405 SUPERFAMILY PAH2 domain 39 108 IPR036600 GO:0006355
Vivi2g01663 1405 FunFam Paired amphipathic helix protein Sin3 45 107 - -
Vivi2g01663 1405 MobiDBLite consensus disorder prediction 1032 1047 - -
Vivi2g01663 1405 SMART hdac_interact2seq4b 482 582 IPR013194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01663 Vivi-Chr2 74547715 74560904 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01663 30 121 WRKY Transcription Factor Family AT4G12020 60.638 5.06e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g01663 Sin3a_C 7.8e-55 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01663 K11644 - gmx:100811928 2108.18