Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01602 ATGACAAAGAAGTTGTGCCCAACATGTGCTAAGAAGCGACGTGTTGATTTCGAACATGCTTCGAAATTTATTTCCAAAGTGAATGTTCGATTTCGACGTGCTCGTCATCGCCATGTATATACAAAGTTTTTAGAGACACTGATAATGTATATGGATGGAGAAAACACTATTGATGGTGTTTGCAAAGAGGTTTATTCACTCTTTGAAGGCCATGATGATCTCATTGATGGGTTTAATGATTTTCTTCCATAG 252 0.373 MTKKLCPTCAKKRRVDFEHASKFISKVNVRFRRARHRHVYTKFLETLIMYMDGENTIDGVCKEVYSLFEGHDDLIDGFNDFLP 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01602 83 ProSiteProfiles PAH domain profile. 13 83 IPR003822 GO:0006355
Vivi2g01602 83 Pfam Paired amphipathic helix repeat 38 82 IPR003822 GO:0006355
Vivi2g01602 83 SUPERFAMILY PAH2 domain 12 83 IPR036600 GO:0006355
Vivi2g01602 83 Gene3D Paired amphipathic helix 9 83 IPR036600 GO:0006355
Vivi2g01602 83 PANTHER SIN3B-RELATED 13 83 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01602 Vivi-Chr2 71978183 71979162 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g01602 PAH 8.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01602 - K11644 vvo:131646273 162.925