Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01600 ATGACAAAGAAGCTGTGCGCAACATGTGCTAAGAAGAGGCCAGTTGTTAATTTCGAACATGCTTCGAAATTTATTTCCAAAGTGAATGTTCGATTTCGACGTGCTCGTCATCGCCATATATATACAAAGTTTTTAGAGACACTGATAATGTATCTGGATGGAGAAAACACTGTTGATGGTGTTTGCAAAGAGGTTTATTCACTTTTTGAAGGCCATGATGATCTCATTGATGGGTTTAATGATTTTCTTCCATAG 255 0.3725 MTKKLCATCAKKRPVVNFEHASKFISKVNVRFRRARHRHIYTKFLETLIMYLDGENTVDGVCKEVYSLFEGHDDLIDGFNDFLP 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01600 84 Pfam Paired amphipathic helix repeat 39 83 IPR003822 GO:0006355
Vivi2g01600 84 Gene3D Paired amphipathic helix 10 84 IPR036600 GO:0006355
Vivi2g01600 84 PANTHER SIN3B-RELATED 16 84 IPR039774 GO:0003714
Vivi2g01600 84 SUPERFAMILY PAH2 domain 14 84 IPR036600 GO:0006355
Vivi2g01600 84 ProSiteProfiles PAH domain profile. 13 84 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01600 Vivi-Chr2 71967361 71968394 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01600 2 83 WRKY Transcription Factor Family AT4G12020 30.435 9.87e-06 40.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g01600 PAH 2.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01600 - K11644 vvo:131646273 177.948