Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01589 ATGGAAAAGGAAATGTGTGATATTTCTGTTGAGAAAAGGCTTAGACTATTTGGTTTTGAGCTAAATCCAATAAAGAATAATATTGAAGGACTTGTGAAAGAGTCTAATGAAGGAGATGAAAGTGTGAATTCCTCTAATTCATTTTCATCCGGAGGAGAGAAAATAGTGCAAGAAAAAGTTTCATCTAGAGACCAACAAGATGAGAGAAAATTTGAGTGTCAATATTGTTTCAAAGAATTTGCAAACTCACAAGCATTAGGAGGCCATCAAAATGCACACAAGAAAGAAAGAATGAAGAAAAAAAGATTGCAACTTCAAGCTAGAAAAGCTAGCATAAACTATTACTTACAACCTTTTCAAAAGAATCACCATGGTTTTTCTTCTTACCATGGTTCTTCTGATACTCATTGGTTTTATGACCCTTCTTCTTATAACAACTCTGATCAATTCTCTTTGTGTGAAGAGTCTCAAATTAGTTTCAAGTCAAAAAATGTTCATCATGATGCCAATTCTTGGTATTCTTTGCCTCCTCATCATGTTCCTACCTCTCAACAAGATACTTGCATGTTTACTTTCTCTAATAAAGATGTTAGGCCTTTCATTTTGGATCCTTCTTTGAATCAAAGTCATAGTAAAGGTTTAGATCTTCAATTAGGTCTCAATTTGGAGTCAAATTCAAGAAGCTCTTTCAAAAGGACATAG 702 0.3348 MEKEMCDISVEKRLRLFGFELNPIKNNIEGLVKESNEGDESVNSSNSFSSGGEKIVQEKVSSRDQQDERKFECQYCFKEFANSQALGGHQNAHKKERMKKKRLQLQARKASINYYLQPFQKNHHGFSSYHGSSDTHWFYDPSSYNNSDQFSLCEESQISFKSKNVHHDANSWYSLPPHHVPTSQQDTCMFTFSNKDVRPFILDPSLNQSHSKGLDLQLGLNLESNSRSSFKRT 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01589 233 Gene3D Classic Zinc Finger 45 125 - -
Vivi2g01589 233 MobiDBLite consensus disorder prediction 34 63 - -
Vivi2g01589 233 MobiDBLite consensus disorder prediction 37 56 - -
Vivi2g01589 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 98 IPR013087 -
Vivi2g01589 233 FunFam zinc finger protein 5 44 124 - -
Vivi2g01589 233 SUPERFAMILY beta-beta-alpha zinc fingers 67 98 IPR036236 -
Vivi2g01589 233 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Vivi2g01589 233 PANTHER ZINC FINGER PROTEIN 5 10 223 IPR044299 GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01589 Vivi-Chr2 70663437 70664546 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01589 9 114 C2H2 Transcription Factor Family AT1G68360 39.130 4.62e-17 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi2g01589 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01589 - - gmx:100799857 267.314