Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01587 ATGCCGGGACGTCGGTCTAAGTCGGAGAAGAAAGATGACGACGAGAAGCAGCTCCGGCGAGACCCGTATGAAGTCCTTGGCGTTAATCGGAACTCCACCGATCAGGAGATTAAATCCGCTTACCGGAAAATGGCTCTCAAGTTTCATCCTGACAAGAATGCTAATGATCCCAAAGCAGCTGATATGTTCAAAGAGGCTACCTTTTCTTATAATATCTTGGCGGACCCTGAGAAACGGCGTCAGTATGACTCATCTGGCTTTGAGGCCGTTGAATCAGATAACCAAGAGTTAGAGTTGGATCTTTCAAGTTTGGGTGCTGTCAACACAATGTTTGCTGCACTTTTTAGCAAACTTGGTGTACCAATCAAGACAACTGTATCTGCCAATGTTTTGGAAGAGGCACTCAATGGGTTAGTTACAATTCGCCCACTTCCATTGGGAGAGTTCATATCTAAAAGGGTTGAGAAGCAGTGTGCACATTTTTATTCAGTTACAATAACAGAAGAGGAAGCAAGAGCTGGATTTGTTTGTCGAGTACAATCATCAGACAAAAGCAAGTTCAAGTTATTATATTTCGACCAGGAAGACAATGGTGGCTTTAGTCTTGCGCTTCAGGAAGACAGTGCAAAAAATGGGAAGTTTACTTCCGCTGGAATGTATTTTCTTGGCTTTCCTGTTTATCGGCTAGACCAAACAATGAACTCCATTGCTGCCGCCAAGGATCCAGATACTTCATTTTTCAAAAAGCTTGATGGGTTCCAGCCCTGTGAGTTAACTGAATTGAAGGCTGGTACCCATACATTTGCGGTTTATGGTGACAACTTTTTCAAAAGTGCAAACTATACAATAGAAGTCCTGTGTGCTGCACCTTTTAATGAAGAAAAAGAAAATTTAAGAAATGTAGAAGCTCAAATTTTGTCCAAGAGAGCAGAAATATCAAAGTTTGAATCAGAATATCGAGAGGTTCTTGCACAATTTACAGAAATGACAAGCAGATATGCACATGAAATGCAAACGATTGATGATCTATTGAAACAAAGAAATGAGATACATGCCTCATACACGGTCGTTCCTTTAAAACGGAGTAGTAGTAGCAGCAAGGGCAGAAATAAAGCATCTTCAAAGGAGTCAAAAGAAGACGGCGAAGCAAGAGAAAAGAGAAGTACAAGAGAACGACCAAGGAAGAAAAAATGGTATAACCTCCACTTAAGAGTTGACAAGAGAAAGGCTTGCTAA 1236 0.4118 MPGRRSKSEKKDDDEKQLRRDPYEVLGVNRNSTDQEIKSAYRKMALKFHPDKNANDPKAADMFKEATFSYNILADPEKRRQYDSSGFEAVESDNQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSANVLEEALNGLVTIRPLPLGEFISKRVEKQCAHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDQEDNGGFSLALQEDSAKNGKFTSAGMYFLGFPVYRLDQTMNSIAAAKDPDTSFFKKLDGFQPCELTELKAGTHTFAVYGDNFFKSANYTIEVLCAAPFNEEKENLRNVEAQILSKRAEISKFESEYREVLAQFTEMTSRYAHEMQTIDDLLKQRNEIHASYTVVPLKRSSSSSKGRNKASSKESKEDGEAREKRSTRERPRKKKWYNLHLRVDKRKAC 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01587 411 SUPERFAMILY Chaperone J-domain 20 90 IPR036869 -
Vivi2g01587 411 Pfam DnaJ domain 21 83 IPR001623 -
Vivi2g01587 411 Gene3D DnaJ domain 5 104 IPR036869 -
Vivi2g01587 411 CDD DnaJ 21 75 IPR001623 -
Vivi2g01587 411 ProSiteProfiles dnaJ domain profile. 21 86 IPR001623 -
Vivi2g01587 411 MobiDBLite consensus disorder prediction 371 389 - -
Vivi2g01587 411 FunFam Chaperone protein dnaJ 16 4 103 - -
Vivi2g01587 411 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 6 410 - -
Vivi2g01587 411 SMART dnaj_3 20 78 IPR001623 -
Vivi2g01587 411 MobiDBLite consensus disorder prediction 1 31 - -
Vivi2g01587 411 Coils Coil 291 318 - -
Vivi2g01587 411 PRINTS DnaJ domain signature 41 56 IPR001623 -
Vivi2g01587 411 PRINTS DnaJ domain signature 78 97 IPR001623 -
Vivi2g01587 411 PRINTS DnaJ domain signature 58 78 IPR001623 -
Vivi2g01587 411 PRINTS DnaJ domain signature 23 41 IPR001623 -
Vivi2g01587 411 MobiDBLite consensus disorder prediction 358 399 - -
Vivi2g01587 411 MobiDBLite consensus disorder prediction 1 23 - -
Vivi2g01587 411 ProSitePatterns Nt-dnaJ domain signature. 63 82 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01587 Vivi-Chr2 70532404 70537220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01587 19 84 C2H2 Transcription Factor Family AT1G74250 40.845 2.01e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01587 - - gmx:100800929 720.694