Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi2g01579 | ATGGGGACGAAGATGAAGTCCAAAACGCAAGTGGTGAAAAACAAAGACAACGATAAGAAAGCCGTTGGTAATGGAACCAACAAAGAAGACAATAGTGTTTTTGCTTCTTGCACCTTCTCTAGCCTTGGTCTTCATCCTACTTTATGTGACCAGCTTCGCGAAAGGATGGGTTTTGAAGGTCCAACATTAGTGCAAGCTCAAGCCATTCCTGTTGTTCTATCTGGCCGTCACGCACTAGTAAATGCTGCTACTGGCACGGGGAAGACTATTGCATACCTAGCTCCAATAATTCATCATTTACAGAGTTATGAAAAGCGAATTGAGCGCTCTGATGGAACCTTTGCGTTGGTTCTTGTACCAACGCGCGAGCTATGTTTGCAGGTTCATGAAATTCTTCAGAAGTTATTGCATCGGTTTCATTGGATTGTTCCAGGATACATTATGGGTGGTGAAAGTAGGTCAAAGGAGAAAGCCAGGCTGCGCAAAGGTATATCAATTCTTATTGCAACTCCCGGCCGTCTTTTAGATCACTTGAAGAATACGACATCATTCTTACATACAAATTTGCGCTGGATAATTTTTGATGAAGCTGATCGTATTTTGGAATTAGGATTTGGAAAAGAGATTCAAGAAATTCTGAATCTTTTAGGTTCAATGAAGACCGGGCATGAGGACCAAGAGAATACTGTTGCAAGACCCTCTAAATTTCAAAGACAGAACCTGCTTTTGTCCGCAACCTTAAATGAGAAAGTAAACCACCTTGCTAAAATTAGTTTAGAGGATCCAGTGATGATTGGTATTGATGATAAAACAATGGAGCCAACTTCAAAAATTAGATTTGCCCATTCCGACTCTGACGAAGACAATGAAGACAAGTTTTCCAATAAAATAGAAGCAGTTGGAGCTTATAAAGTGCCCGAACAGTTGATTCAGAGATATTTGAAGGTGCCTTGTGGATCACGGCTTGCTACACTTCTTTCAGTTCTAAAGCATCTTTTTGAAAGGGAACCTTCACAGAAGGTTGTAGTATTCTTTTCAACATGTGATGCCGTGGACTTTCACTATTCGGTGTTAACCGAATTCCTTTTCTCATCACATCCACAAACTGAAGAAGGGAACAGACCAATTTTTCTTGGATGCAAAACTCTCCGGTTACATGGTAATATGGAACAGGAGGACAGGACGGCCAGTTTTCAGGCCTTTAAAACTGATAAGTCTGCTCTTCTTTTGTCTACCGATGTTTCTGCCAGAGGCCTAGATTTTCCAAATGTTAGATGCATCATACAATATGATTCTCCTGGAGAAGCTACTGAATATGTGCATAGAGTTGGAAGAACTGCTCGACTGGGCGAAAGAGGAGAGTCATTGTTATTTCTGCAACCTGCTGAAATAGACTATTTACAAGACTTGAAGAAACACGGTGTCTCATTAACAGAGTATCCTCTCGTCAAAGTGTTGGACAGTTTCCCACTGTCTGGACACAAAAACATGAAGAATTCTGTTTTCATAGACATGCATCCATGGATCATGTGTCTCCAGAAGGCACTCGAATCCTTCCTCTCGTCCAAGCCCCATATGGATGAACTTGCCAAGAAGGCATTTTGCTCTTGGGTCCGTGCATACACAGCACATCGCGGGGACCTGAAAAGAATATTTATGGTCAAGAAACTCCACTTGGGGCACGTAGCAAAAAGCTTTGCGTTGAAACAAATCCCCTCTTTAGTTGGAAAATCATTCCAAAACCAAGCTAAGAAGAGAAAAAGATTTGAGAAGAAAAATGGGCCGTCAAATAAGAGAAAAGTTGCACGACGGGTGAAGTAA | 1821 | 0.4146 | MGTKMKSKTQVVKNKDNDKKAVGNGTNKEDNSVFASCTFSSLGLHPTLCDQLRERMGFEGPTLVQAQAIPVVLSGRHALVNAATGTGKTIAYLAPIIHHLQSYEKRIERSDGTFALVLVPTRELCLQVHEILQKLLHRFHWIVPGYIMGGESRSKEKARLRKGISILIATPGRLLDHLKNTTSFLHTNLRWIIFDEADRILELGFGKEIQEILNLLGSMKTGHEDQENTVARPSKFQRQNLLLSATLNEKVNHLAKISLEDPVMIGIDDKTMEPTSKIRFAHSDSDEDNEDKFSNKIEAVGAYKVPEQLIQRYLKVPCGSRLATLLSVLKHLFEREPSQKVVVFFSTCDAVDFHYSVLTEFLFSSHPQTEEGNRPIFLGCKTLRLHGNMEQEDRTASFQAFKTDKSALLLSTDVSARGLDFPNVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPAEIDYLQDLKKHGVSLTEYPLVKVLDSFPLSGHKNMKNSVFIDMHPWIMCLQKALESFLSSKPHMDELAKKAFCSWVRAYTAHRGDLKRIFMVKKLHLGHVAKSFALKQIPSLVGKSFQNQAKKRKRFEKKNGPSNKRKVARRVK | 606 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi2g01579 | 606 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 324 | 497 | IPR001650 | - | |
Vivi2g01579 | 606 | MobiDBLite | consensus disorder prediction | 9 | 25 | - | - | |
Vivi2g01579 | 606 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 193 | 201 | IPR000629 | - | |
Vivi2g01579 | 606 | PANTHER | RNA HELICASE | 26 | 577 | - | - | |
Vivi2g01579 | 606 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Vivi2g01579 | 606 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 69 | 265 | IPR014001 | - | |
Vivi2g01579 | 606 | SMART | helicmild6 | 352 | 450 | IPR001650 | - | |
Vivi2g01579 | 606 | CDD | DEADc_DDX31 | 48 | 266 | - | - | |
Vivi2g01579 | 606 | Gene3D | - | 319 | 594 | IPR027417 | - | |
Vivi2g01579 | 606 | Pfam | DEAD/DEAH box helicase | 63 | 253 | IPR011545 | GO:0003676|GO:0005524 | |
Vivi2g01579 | 606 | Pfam | Domain of unknown function (DUF4217) | 513 | 573 | IPR025313 | - | |
Vivi2g01579 | 606 | Gene3D | - | 2 | 268 | IPR027417 | - | |
Vivi2g01579 | 606 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 112 | 471 | IPR027417 | - | |
Vivi2g01579 | 606 | Pfam | Helicase conserved C-terminal domain | 328 | 450 | IPR001650 | - | |
Vivi2g01579 | 606 | SMART | ultradead3 | 57 | 279 | IPR014001 | - | |
Vivi2g01579 | 606 | FunFam | RNA helicase | 2 | 267 | - | - | |
Vivi2g01579 | 606 | SMART | DUF4217_3 | 511 | 576 | IPR025313 | - | |
Vivi2g01579 | 606 | MobiDBLite | consensus disorder prediction | 582 | 606 | - | - | |
Vivi2g01579 | 606 | CDD | SF2_C_DEAD | 309 | 459 | - | - | |
Vivi2g01579 | 606 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 37 | 66 | IPR014014 | GO:0003724 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi2g01579 | Vivi-Chr2 | 69826735 | 69834145 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi2g01579 | 38 | 482 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 26.058 | 1.67e-35 | 136 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi2g01579 | K14806 | - | gmx:100805157 | 952.584 |