Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01573 ATGTACATAAAGGAGAATAAGTCTATCGACGCGGTCTACCAGGAGGTTGCTGCACTCTTCCAAGACCACCCAGATCTTCTTGATGGGTTTATTCATTTACTTCCCGATGTTTCCGCAGCTGCCTCTGCTCATTCTGTTGCTCGGAATTCTGGGTTTCGAGATAGGAACTCTTCACTGCAAACAGTGCGGCAACTGCATGTTGAAAAGATCGAGGTGAAGTGTTTCTTTCAGCAGGTGCAATTGGGTCTCCCCAGCTTCTTCTTCTCAGTAGAATTGGACCAAGGCCTTATCTTTCTTCATGAAGAAGCCCAGTCAATCAAAGTAGAGAATATATTGTTCAAGGAAAAGTCATTATACCAAGAGGTCTTGGTTTTTGAGTCATTAACATTTGGTAACACTGATAAGGATATGAACTTCTTGTATTTACCGAAGAATGCATTCAATCTAATGAACAAACGGCCACGGGGCTCCGAAGCGAATTACTAA 486 0.428 MYIKENKSIDAVYQEVAALFQDHPDLLDGFIHLLPDVSAAASAHSVARNSGFRDRNSSLQTVRQLHVEKIEVKCFFQQVQLGLPSFFFSVELDQGLIFLHEEAQSIKVENILFKEKSLYQEVLVFESLTFGNTDKDMNFLYLPKNAFNLMNKRPRGSEANY 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01573 161 Pfam Paired amphipathic helix repeat 2 30 IPR003822 GO:0006355
Vivi2g01573 161 Gene3D Spermidine synthase, tetramerisation domain 52 133 IPR037163 -
Vivi2g01573 161 Pfam Spermidine synthase tetramerisation domain 102 132 IPR035246 -
Vivi2g01573 161 Gene3D Paired amphipathic helix 1 35 IPR036600 GO:0006355
Vivi2g01573 161 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 95 161 IPR030374 -
Vivi2g01573 161 SUPERFAMILY PAH2 domain 1 36 IPR036600 GO:0006355
Vivi2g01573 161 PANTHER SIN3B-RELATED 1 121 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01573 Vivi-Chr2 69597326 69600990 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g01573 Spermine_synt_N 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01573 K11644 - vvo:131651252 309.686