Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01539 ATGTCGCTCTCCTACTCCAACTTCTTCCCCGATGACGACCTCCTATGCTGCGAGGAAACCTCCAGCATCTTGTCCGGAGATTCGCCGATGGAAAGCTTATCTGATGTCGATTCGTCTCCGCCGCCGGAGGAGGTGTTCATCGCCGGATTAATCGATGACGAACATAAGTTCGTCCTCGGATTTGACTACTTCTCTAAGTTACAGTCTCGCAAGATCGATGCATCGGCCAGAACCGAATCCGTTGCATGGATCCTAAAGGTACAGGCTTTTTTTAGTTTTCAACCGCTCACGGCTTATCTCGCCGTCAACTACATGGATCGGTTCTTGAATTCTCGGCAGTTGCCGCAATCAAATGGGTGGCCACTGCAACTTCTATCGGTTGCTTCCTTGTCTCTAGCGGCCAAGATGGAGGAAACTCTAGTCCCTTCTCTATTGGACCTTCAGGTAGAAGGTGCCAAATACATATTTGAACCCAGAACAATTAGGAGAATGGAGCTACTTGTTCTAAGTGTCTTGGATTGGAGGCTAAGATCAGTTACTCCATTTAGCTTCCTCAGTTTCTTTGCATGCAAGTTAGATTCAACCGGAATTTTTACCGGGTTCCTCATTTCACGAGCTACACAAATTATCTTATCTCATATCCAAGAAGCAAACTTTCTTGCATATTGGCCATCATGCATTGCCGCAGCGGCTATTCTCTATGCAGCTAATGAAATTCCTAATTGGTCGCAAGTTGAGCCGGAGCATGCCGAGACATGGTGCGAGGGGCTAAGAAAAGAGAAAATTAAAGGGTGCTACAGGTTAATGGAAGAACTTATGATTGACAATAACCAAAGGAAAGCCCCTAAAGTGTTGCCACAGCTGCGAGTGACGACTCAGCCACTAATGAGGTCAAGTGTCTCGTCATCCTCCTCCTCTTCTCCTTCCTCCTCACCATCCTATAATAAAAGAAGGAAATTGAATAACTGTTGGTGGGTAGATGATGACAAAGGAAACTCCCTATGA 1005 0.4617 MSLSYSNFFPDDDLLCCEETSSILSGDSPMESLSDVDSSPPPEEVFIAGLIDDEHKFVLGFDYFSKLQSRKIDASARTESVAWILKVQAFFSFQPLTAYLAVNYMDRFLNSRQLPQSNGWPLQLLSVASLSLAAKMEETLVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWRLRSVTPFSFLSFFACKLDSTGIFTGFLISRATQIILSHIQEANFLAYWPSCIAAAAILYAANEIPNWSQVEPEHAETWCEGLRKEKIKGCYRLMEELMIDNNQRKAPKVLPQLRVTTQPLMRSSVSSSSSSSPSSSPSYNKRRKLNNCWWVDDDKGNSL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01539 334 CDD CYCLIN_AtCycD-like_rpt2 179 269 - -
Vivi2g01539 334 SMART Cyclin_C_2 179 306 IPR004367 -
Vivi2g01539 334 MobiDBLite consensus disorder prediction 295 317 - -
Vivi2g01539 334 Pfam Cyclin, N-terminal domain 50 176 IPR006671 -
Vivi2g01539 334 SUPERFAMILY Cyclin-like 48 176 IPR036915 -
Vivi2g01539 334 PANTHER CYCLINS 56 274 IPR039361 -
Vivi2g01539 334 FunFam D2/4-type cyclin 60 177 - -
Vivi2g01539 334 Gene3D - 60 177 - -
Vivi2g01539 334 Pfam Cyclin, C-terminal domain 179 289 IPR004367 -
Vivi2g01539 334 ProSitePatterns Cyclins signature. 77 108 IPR006671 -
Vivi2g01539 334 Gene3D - 50 266 - -
Vivi2g01539 334 SMART cyclin_7 82 170 IPR013763 -
Vivi2g01539 334 CDD CYCLIN_AtCycD-like_rpt1 76 174 - -
Vivi2g01539 334 SUPERFAMILY Cyclin-like 161 279 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01539 Vivi-Chr2 68514697 68518410 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01539 1 333 Core Cell Cycle Gene Families AT1G70210 59.821 1.45e-128 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01539 K18810 - gmx:100780369 478.789