Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01468 ATGGCATCTTCAAGTATTGATTGGAAGCCATTGGTTGGTATGAAGTTTGACTCAATAGAAACAGCTTATCAGTTTTGGCTCGCATACGGTGCACATGTTGGCTTTGGTGTTAGAAAACGTTATGTGAACAAAAGTAGAAAAGATGGTACTATATCATCATGTAGGTTTGTTTGTAGCAAGGAAGGATTACGACAACCTGACAAGAGAGATGTCTTTGTTAGCAACCATAGAGCTGAGACCAGAACGGATTGCAAAGCAAGGATAGCTCTTGTATTGAAAAATGGAAAATTTGTCATTCATGAATTTGTACAAGACCATAATCACCCTCTACAACCACCAGAGGAAACGAATTTGGATATTATACAGTTTTTCAAACACTTTGAACAAGTTGTTGAGGAGAAGAGAGGAAACGAATTGACTTGTGAGTATGAGTCCAAACATAAGCTTGCAAGGTTGAGATATGAGACATCTCCAATACTAATACAAATGGGAAAGATTTATACCCATGCTGTATTTGATTTATTCCAAAACGAGTTTAAGTTATTCTTAGCAATGAGCATACTAGAGAGAAGTGAGTCTCACTCTTTATGCAAATATTCCATCACTATGGACAATCATGAAAAATCTTGGAAAGTATCATTTAACCGTGCTTCATCCTCTATATCTTGTAGTTGTAGAAAATTTGAGACATTTGGCATACTTTGTTCACACGCATTAAAAGTGTTTGAAGCAAATGATGTTAAGGTCGTTCCTGATGAGTATATTTTAAGAAGGTGGACATTAGAAGCTCGTTGCGGTGTTGTGCAAGATTTGAGGGGGAAAGAGGTGGAAGGTGATCCAAAGTTATCTATCACGCAAAAATTTAGAAACGTTGTTTCTAAATTCATTCGAGTAGCTGCTAGCGCGTCTCCTTTTGAAGAGTGTCTTGAGATTGTAGATAACACGGTTGATTTACTGAATAAAGAATTAATGGAATTTCACTTACAAGCCAGAAACAATAATGCTAATAATCCGACATTTGTGACTAATGATGTTACACAACCCAGTGGATTCAAGATACGGTCTGGCTCAAAAAAACAAAAGAGACGCAAGGGTTGGGTTGAGATTATGCAGAATAGAAAGAAAAATGTACAACCTAGAAAACAATCACAATGTCAAATATCTCAGACAATATCATGTTCGGCACCTCCAACTTACGAGCCGCCTCAAACACAAGATGGTCAACTTAGTTTTACAGCACTTTTGATGGCACCTTTCAATGACACAAACATTGCAATATTGGATTAA 1287 0.3691 MASSSIDWKPLVGMKFDSIETAYQFWLAYGAHVGFGVRKRYVNKSRKDGTISSCRFVCSKEGLRQPDKRDVFVSNHRAETRTDCKARIALVLKNGKFVIHEFVQDHNHPLQPPEETNLDIIQFFKHFEQVVEEKRGNELTCEYESKHKLARLRYETSPILIQMGKIYTHAVFDLFQNEFKLFLAMSILERSESHSLCKYSITMDNHEKSWKVSFNRASSSISCSCRKFETFGILCSHALKVFEANDVKVVPDEYILRRWTLEARCGVVQDLRGKEVEGDPKLSITQKFRNVVSKFIRVAASASPFEECLEIVDNTVDLLNKELMEFHLQARNNNANNPTFVTNDVTQPSGFKIRSGSKKQKRRKGWVEIMQNRKKNVQPRKQSQCQISQTISCSAPPTYEPPQTQDGQLSFTALLMAPFNDTNIAILD 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01468 428 SMART 26again6 221 248 IPR006564 GO:0008270
Vivi2g01468 428 ProSiteProfiles Zinc finger SWIM-type profile. 199 246 IPR007527 GO:0008270
Vivi2g01468 428 Pfam SWIM zinc finger 220 244 IPR007527 GO:0008270
Vivi2g01468 428 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 117 303 IPR031052 GO:0006355
Vivi2g01468 428 Pfam FAR1 DNA-binding domain 24 112 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01468 Vivi-Chr2 63431226 63433107 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi2g01468 FAR1 6e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01468 - - vvo:131649239 850.892