Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01387 ATGCATTTTTTTCACTCTCAAATCCATATTAACAATCGTGCTAGTGCTATCACAAATCCTCCTATTCTTTCTCCATATTCTTCTTCAACTCCTTATAGCCAAAAAGAATCAGAACCAGTTCCAATTTCTTCATCTGGAAACAAAATAAGTCCTACAATTCTCTTCATCATAGTTATATTAGCTATTATATTTTTCATTCTAGGTTTCCTTCACTTGCTTGTTAGGTTTCTCATGAAGCATAGATCTTCTAGCTCTTCATCAATTTCTCAATCAAATACGTTTCCTGAAATGTCTGAATCTGATGCATATCAAAGACAGTTGCAGCAGCTTTTCAATCTTCATGATTCCGGTTTGGATCAGCCATTCATTGATGCTCTTCCTGTTTTCATTTACAAAGAGATTATAGGTTTGAAAGAGCCTTTTGATTGTGCTGTTTGTCTCTGTGAGTTTTTGGAACAAGATAAGTTGAGATTGTTACCTAATTGTAATCATGCTTTTCATATTAACTGCATAGATACATGGTTATTGTCAAATTCAACTTGTCCTTTATGTAGAGGGACACTTTATGCCCAAGGGTTTTCGTTCGAGAAAAATCCTGTTTTTGAGTTTGAGGATCAAAGGGATGAAGATTGTGTTATAGGGATTGGTTCAGTCAACAAGAATATGGAAAACCATATAATGAATGGGAAAAGGGTTTTTTCTGTTAGGCTTGGAAAGTTTAGAAGTTCAAATGATGGAGAAGGGGTTGAAAAAAGTGAAGGAGAAAGTAGTAGCTGTAATTTTGATGTTAGGAGATGCTATTCAATGGGATCTTTTCAGTATGTTGTTTGTGATTCAGATTTGCAAGTTGCTTTGAAACCTTCTAAATGTGATGGAAGTATGAGACAATTGAAGGGAATTCGAGAAACTCAAGATGAGAGTTATTCAAATGATGGAGATGTTGAAGGCAAGAAAATCAACATTGCAAGGAAAGGTGAAAGTTTTTCTGTTTCAAAGATTTGGCAATGGTCTAAGAAAGATAATAAGATACCAAGTTCATCAGATACGCATTTTCATAATTGTGTTGTCAATGAAAGTTTTCCATGGATGAATAAAGCTAGAGGTACATGA 1110 0.3441 MHFFHSQIHINNRASAITNPPILSPYSSSTPYSQKESEPVPISSSGNKISPTILFIIVILAIIFFILGFLHLLVRFLMKHRSSSSSSISQSNTFPEMSESDAYQRQLQQLFNLHDSGLDQPFIDALPVFIYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPNCNHAFHINCIDTWLLSNSTCPLCRGTLYAQGFSFEKNPVFEFEDQRDEDCVIGIGSVNKNMENHIMNGKRVFSVRLGKFRSSNDGEGVEKSEGESSSCNFDVRRCYSMGSFQYVVCDSDLQVALKPSKCDGSMRQLKGIRETQDESYSNDGDVEGKKINIARKGESFSVSKIWQWSKKDNKIPSSSDTHFHNCVVNESFPWMNKARGT 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01387 369 CDD RING-H2_EL5-like 142 185 - -
Vivi2g01387 369 SUPERFAMILY RING/U-box 122 191 - -
Vivi2g01387 369 FunFam RING-H2 finger protein ATL46 105 190 - -
Vivi2g01387 369 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Vivi2g01387 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 192 IPR013083 -
Vivi2g01387 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 44 334 - -
Vivi2g01387 369 SMART ring_2 143 184 IPR001841 -
Vivi2g01387 369 Pfam Ring finger domain 142 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01387 Vivi-Chr2 59281812 59285027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01387 42 347 C3H Transcription Factor Family AT2G18650 43.109 1.02e-58 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01387 - - tpra:123906744 499.204