Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01369 ATGATCCAAACAACAAACGGGTCGGGTCGCCGGGTATTCAATTTCCCGGCGGTTCATCCATACGCAAACGTTCCTCTTTCCACTCTTCTCACTTCCCTCATCACTCTCTCCGACGATATTTCCGATTTCCAACACAAATTCTTCTCTTCCAATAAACGAAACTCCAGAAACGCTATTCGTTTGATTCATCTTCTCCAACCATTCCTTCATGACATCCGAGAAAATCATTCCAATCTTCCATCTCCGGCGACGCTCTGTTTCACCGAGCTTCATCTCATCTTCCAGAAGCTTCTTTTCCTGATGCAAGATTCAACCAAAGAAGGTGCAAGGTTGCTTATGCTAATGGAGTCGAGTCGGGTTGCGACAATGTTTCGGGTGTTGTTCCGATCCGTTGCAGCTGCGCTTGATGTTTTTCCTTTTGATGCTGTTGATGTGTCTGTGGAAGCTAAAGAGGATGTTTTGTTGTTGATGAAGCAAGCGAGGGAGGGGAGGTTTGAATTTGAGGTTGAGGATGAGGAGGTAGTGATGTGTGTTGTGAATGTCTCGAAGCTGTTTGAGAAAAGGGTTGCTCCAGAAAAGTTTGATTTGAAACGTGTTCTTGATTATATTGGGGTTTTGAAGTGGAGTGAGGTTGATAAAGAGGTCAAGTTTTTGGATGGTGAAATTGAGTTTGAGTGGTTGAATGAGAAAAAGAAAAGGAAAAAAGTGGATATTTTAAGTAGTTTGATGGGGTTTATGAGTTATTTTAGATGCGTGGTGATGGAGATTGTGGACTTTGAAGAGGGGAAAAGTAGTAAGAAAGTTGATGCAAGAATAGAAACTGAAATGATTTTGAGTTGTGTAAACTCGGATGATTTTCGATGTCCAATCTCTTTGGAATTGATGAGTGATCCTGTTAATATTGAAACCGGTCATACTTATGATCGTTCTTCGATTCTCAAATGGTTTAGAAGTGGAAATGCAATGTGTCCAAAGACAGGTAAAAGTCTTAGCAGCATTGAATTGGTACCTAATTTGGTACTCGGGAAGTTGATTCAACAGTACTGCAATGTCAATGGCATTCCTTTTTCTGATTCGGGTCGTCGGAATCGGGACATGACAAGGACAATGCAGCCTGGCAGTGCAGCTGCAGAGGGTGCAATGAAGCTCTTGGCTGGTTTTCTTTGTGGATGTCTTGACAATGGAAATGTGGAACAGAAGAGCCGTGCTGCATTTGAGGCAAGAGTTCTAACCAAAACAAGCATTTTTAGTAGGTCTTGTTTGGTAGAAGCTGGTTCAGTTCCTCTTTTGTTGTTGTTGTTGGCATCAAGTGATTCATCAGCACAAGAGAATGCTATTGCAGCTCTTTTAAACATCTCAAAATACACCAAAAGTAGAAGTGAAATGGTTGAAAATTGGGGATTAGAAATGATTGTTGGTGTCTTAAACAAAGGGATAACAATTGAAGCAAAACAACATGCTGCAGCAGTGTTGTTTTACCTTGCTTCAAATGCCGACCATGGTAACTTAATAGGCAAAGAGCCAGAGGCAATTCCCTCATTGATCAGTCTCATCAAAGACGGCACTGATCGAAGTGTAAAGAATGGTTTGGTTGCAATTTTTGGCCTCCTAAAAAACCATGAAAATCACAAGAGGATACTTGCTGCTCAAGCAATTCCTTTGTTAGTTAACATCTTAAAAGCACATGAAAAAGAAGAACTTGTCACAGACTCACTAGCAATTCTAGCAACTCTTGCAGAGAAAAGCGACGGAACAATGGAAATCCTCCGTTTCGGAGCTTTGCATGTAGCTGTTGAAGTTATGAGTTCTTCCTCAACTACTTCAAGATTAGGAAAAGAGCATTGTGTGTCTTTGTTGCTTTCTCTATCAATGAATGGAGGAGAAAATGTGGTTGCTCATTTAGTGAAGAGTTCTTCTCTTATGGAATCTTTATATTCACAACTAAGTGAAGGAACTTCTAAAGCAAGCAAAAAGGCCAGTTCTCTCATAAGGGTCCTTCAAGATTTTTATGAAAGGGGATCCTCTAACTACAAGACATCAGTTATTCCACGTGAACAATTCATTCATGTATGGTAA 2076 0.4066 MIQTTNGSGRRVFNFPAVHPYANVPLSTLLTSLITLSDDISDFQHKFFSSNKRNSRNAIRLIHLLQPFLHDIRENHSNLPSPATLCFTELHLIFQKLLFLMQDSTKEGARLLMLMESSRVATMFRVLFRSVAAALDVFPFDAVDVSVEAKEDVLLLMKQAREGRFEFEVEDEEVVMCVVNVSKLFEKRVAPEKFDLKRVLDYIGVLKWSEVDKEVKFLDGEIEFEWLNEKKKRKKVDILSSLMGFMSYFRCVVMEIVDFEEGKSSKKVDARIETEMILSCVNSDDFRCPISLELMSDPVNIETGHTYDRSSILKWFRSGNAMCPKTGKSLSSIELVPNLVLGKLIQQYCNVNGIPFSDSGRRNRDMTRTMQPGSAAAEGAMKLLAGFLCGCLDNGNVEQKSRAAFEARVLTKTSIFSRSCLVEAGSVPLLLLLLASSDSSAQENAIAALLNISKYTKSRSEMVENWGLEMIVGVLNKGITIEAKQHAAAVLFYLASNADHGNLIGKEPEAIPSLISLIKDGTDRSVKNGLVAIFGLLKNHENHKRILAAQAIPLLVNILKAHEKEELVTDSLAILATLAEKSDGTMEILRFGALHVAVEVMSSSSTTSRLGKEHCVSLLLSLSMNGGENVVAHLVKSSSLMESLYSQLSEGTSKASKKASSLIRVLQDFYERGSSNYKTSVIPREQFIHVW 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01369 691 Pfam Armadillo/beta-catenin-like repeat 418 453 IPR000225 GO:0005515
Vivi2g01369 691 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 354 IPR013083 -
Vivi2g01369 691 PANTHER U BOX DOMAIN-CONTAINING 50 666 - -
Vivi2g01369 691 FunFam RING-type E3 ubiquitin transferase 362 677 - -
Vivi2g01369 691 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 425 467 IPR000225 GO:0005515
Vivi2g01369 691 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 550 593 IPR000225 GO:0005515
Vivi2g01369 691 SUPERFAMILY ARM repeat 387 666 IPR016024 -
Vivi2g01369 691 SMART arm_5 413 454 IPR000225 GO:0005515
Vivi2g01369 691 SMART arm_5 455 496 IPR000225 GO:0005515
Vivi2g01369 691 SMART arm_5 539 580 IPR000225 GO:0005515
Vivi2g01369 691 CDD RING-Ubox_PUB 284 335 IPR045210 -
Vivi2g01369 691 SUPERFAMILY RING/U-box 284 356 - -
Vivi2g01369 691 FunFam RING-type E3 ubiquitin transferase 282 354 - -
Vivi2g01369 691 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Vivi2g01369 691 Pfam U-box domain 284 350 IPR003613 GO:0004842|GO:0016567
Vivi2g01369 691 Gene3D - 366 677 IPR011989 -
Vivi2g01369 691 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01369 Vivi-Chr2 58090389 58092603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01369 1 691 U-box Gene Family AT1G10560 42.535 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01369 - - gmx:100795816 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g01369 2 58090389 58092603 Vivi2g01369 2 58090389 58092603 ECH