Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01338 ATGAGTTCAGAAATGGCTAAGGAAAATAATAAGGAGTCTAACGGAACGTCTTCTTCTCCTACAGAAAAAGGTTCGGAAAAAGGTTCTGAAAAAGATTCCGAAAAAGCTCCTGAAAAAGTTTCAGAAAAAAAAGCTTCTGCTCCTTCTCCTTCTAAATCACCTCCTGAAGAATCAAATCCTCCAGAAAAAGCACCATCAAAGTCTCCACCTCCGCCTTCATCATCACCTCCTCCGCAGCAGTCTCCACCGCCACCTGCACCGCCTCGTTCTCCACCACCTTCTCCATCACTATCTCCTCCGCCAGCACAAACTCCACCGGAAGCTCCACCGCCAGATTCTTCGCCACCTCCAGCAAAAGCTTCACCTCCTGAACCTTCTCAATCATCGCCGCCTCAATTGTCACCGCCTCCAACACCTCTATCATCGCCACCAGCTCCATTATTTTCACCACCACCACCACTGCTCGGCGAATCTTCTCCCACTCCATCACATTCTAATTCCCCTCCTCCATCTCCTCAAGCTCCTTCCTTACCTTCCCCTTCTTTAAAATTTAGTCCTCCACCACCGCACGGCCATCCTTCGCCACCACAATCACCTTCCATTTCCCCAAGCTCTCGTTCAAAACCAATCCCTTCTCCTCCCAAAAGCAACTCTCAGTCTAAACAACCCTCCTCCAATTCTAATACAGCACAATACGTTGGTATTACTCTCGCAACAGTTTTTGTTCTCGCCTTTATAGCAGCCGTTCTTTTTCTATTATTAAAAAAGAAAGAGAAACGAGGGAATATCTATGCTTTGCCACCCCCCAAGAAATCTCAAATGAAAGGAGATGTGCATTACTATGTAGAGTCACCAGGTTTTGGTTATGATAATAGGAATCATTTAGTTGCAATGCAGCATTTGAGAAGTCCTTCAGACCCAACACAACAACAAATGAATACTGGCCAAATTTTTTTTAGTTATGAACAGATTGTGGAAATCACTAATGAGTTTTCAAGTGAAAATGTGATAGGAGAAGGGGGTTTTGGGCGTGTTTACAAGGCTTCAATGCCTGATGGTAGAGTTGGAGCGGTTAAGTTATTGAAGGTCGGTAGTGGTCAAGGAGAGAGGGAGTTCAGAGCAGAGGTTGATATTATTAGTCGTGTACATCATCGACATTTGGTATCGTTGATTGGTTATTGTATATCTGAGCAACAAAGAGTTCTCATTTATGAGTTTGTTCCTAACGGGAATCTTGATCAACATTTGCATGAAAGTGAATGGAATGTTTTGGATTGGTCCAAAAGGACGAAGATAGCAATTGGTGCTGCAAGGGGCCTAGCATATTTACACGAAGGCTGCAACCCAAAGATTATTCACAGAGATATTAAGTCGTCGAATATACTGTTGGATAATGCTTATGAGGCACAAGTTGCAGACTTTGGACTTGCCCGACTAACCGATGATGCTAATACTCATGTATCAACTAGGGTGATGGGTACTTTTGGCTATATGGCTCCAGAGTATGCAACGAGTGGAAAACTAACGGATAGATCAGACGTTTTCTCATTCGGAGTTGTTCTTCTTGAGCTCATAACCGGAAAGAAACCTGTTGATGCAACACAACCCGTGGGGGATGAGAGTTTGGTCGAGTGGGCTCGTCCACTTCTCCTTCGTGCAATCCAGTCGGGTGATTTTAGTGAACTAGCAGACCCAAGGCTTCAACGACAATACGTTGACAGTGAAATGTTTAGAATGATCGAGGCAGCTGCAGCATGTGTTCGTCATTCTGCCCCAAAACGACCCCGTATGGTTCAGATTGCAAGAGCCTTGGAAATTGGAGATCAACTATATGATCTATCAAACGGGGTGAAATACGGGCAGAGCACAATTTATGATTCTGGACAGTATAATGAAGACCTTATGAGATTCAAAAGGATGGCTAATGGAAGTTTTGATGACTCTGAATTCGATATTTATAGCGCGGAATACAGTTCAAGAGACATGCCTAGTGGATCTACATGGATCCCCCAAACTCCAAGTGCTGATTCACAGATTAAACCTGTCCAAGAATAA 2055 0.4399 MSSEMAKENNKESNGTSSSPTEKGSEKGSEKDSEKAPEKVSEKKASAPSPSKSPPEESNPPEKAPSKSPPPPSSSPPPQQSPPPPAPPRSPPPSPSLSPPPAQTPPEAPPPDSSPPPAKASPPEPSQSSPPQLSPPPTPLSSPPAPLFSPPPPLLGESSPTPSHSNSPPPSPQAPSLPSPSLKFSPPPPHGHPSPPQSPSISPSSRSKPIPSPPKSNSQSKQPSSNSNTAQYVGITLATVFVLAFIAAVLFLLLKKKEKRGNIYALPPPKKSQMKGDVHYYVESPGFGYDNRNHLVAMQHLRSPSDPTQQQMNTGQIFFSYEQIVEITNEFSSENVIGEGGFGRVYKASMPDGRVGAVKLLKVGSGQGEREFRAEVDIISRVHHRHLVSLIGYCISEQQRVLIYEFVPNGNLDQHLHESEWNVLDWSKRTKIAIGAARGLAYLHEGCNPKIIHRDIKSSNILLDNAYEAQVADFGLARLTDDANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELITGKKPVDATQPVGDESLVEWARPLLLRAIQSGDFSELADPRLQRQYVDSEMFRMIEAAAACVRHSAPKRPRMVQIARALEIGDQLYDLSNGVKYGQSTIYDSGQYNEDLMRFKRMANGSFDDSEFDIYSAEYSSRDMPSGSTWIPQTPSADSQIKPVQE 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01338 684 FunFam proline-rich receptor-like protein kinase PERK8 407 619 - -
Vivi2g01338 684 ProSiteProfiles Protein kinase domain profile. 331 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g01338 684 Gene3D Phosphorylase Kinase; domain 1 293 406 - -
Vivi2g01338 684 MobiDBLite consensus disorder prediction 1 23 - -
Vivi2g01338 684 MobiDBLite consensus disorder prediction 53 210 - -
Vivi2g01338 684 MobiDBLite consensus disorder prediction 659 684 - -
Vivi2g01338 684 FunFam Proline-rich receptor-like protein kinase PERK8 303 406 - -
Vivi2g01338 684 SUPERFAMILY Protein kinase-like (PK-like) 307 605 IPR011009 -
Vivi2g01338 684 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 241 644 IPR047117 -
Vivi2g01338 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Vivi2g01338 684 MobiDBLite consensus disorder prediction 656 684 - -
Vivi2g01338 684 CDD STKc_IRAK 337 605 - -
Vivi2g01338 684 SMART serkin_6 331 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g01338 684 Gene3D Transferase(Phosphotransferase) domain 1 407 615 - -
Vivi2g01338 684 MobiDBLite consensus disorder prediction 24 42 - -
Vivi2g01338 684 MobiDBLite consensus disorder prediction 211 228 - -
Vivi2g01338 684 Pfam Protein tyrosine and serine/threonine kinase 334 603 IPR001245 GO:0004672|GO:0006468
Vivi2g01338 684 MobiDBLite consensus disorder prediction 1 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01338 Vivi-Chr2 56909624 56925072 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01338 192 667 Trihelix Transcription Factor Family AT1G70460 55.179 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vivi2g01338 PK_Tyr_Ser-Thr 7.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01338 - - tpra:123908299 696.041