Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01318 ATGTCAACACTAAACCATCTTTTTGATCTTCCAGAACAAATATGTTACGTACAATGTGGATTCTGCAACACCATTTTAATGGTAAGTGTTCCATGCAGCAGTTTATCCATGGTGGTGACAGTAAGATGTGGTCACTGCACAAGTCTCTTATCAGTTAACATGATGAAAGCTTCTTTTGTCCCTTTCCATCTTTTAGCATCTCTTACTCATCTTGAGACGCCAAAAGAAAGTAGTAGTCCAGATGAAGATGCAAACAAGGCTTTGATAACTTATTCTGATTGCGAGGATGATGATATAATTCCAATCACGAACGTAGTCAATAAGCCACCAGAGAAGAGACAAAGAACACCATCAGCTTATAACAGATTCATCAAAGAAGAGATTAGAAGGCTAAAATCTCAACACCCTGATATGGCTCACAAAGAAGCTTTCAGCACAGCTGCAAAAAATTGGGCCAATTGTCCTCAAATACAGTTCAAAGGAGATGAAGAGAGTTGTAACTTGACAGATCAGCTTGTGGATCTTGACTCTCAAGTGGACCCTAATGATGCTGAGGTGAATATTGAAGAAGAACAAGGTTTTCGTGGAAGAAAGGTAGCAAGAAATTCCATCTTGGAAAGGACAGCATTTCAGTGA 636 0.3915 MSTLNHLFDLPEQICYVQCGFCNTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLTHLETPKESSSPDEDANKALITYSDCEDDDIIPITNVVNKPPEKRQRTPSAYNRFIKEEIRRLKSQHPDMAHKEAFSTAAKNWANCPQIQFKGDEESCNLTDQLVDLDSQVDPNDAEVNIEEEQGFRGRKVARNSILERTAFQ 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01318 211 SUPERFAMILY HMG-box 103 155 IPR036910 -
Vivi2g01318 211 PANTHER PROTEIN YABBY 6-RELATED 2 166 IPR006780 GO:0007275
Vivi2g01318 211 Pfam YABBY protein 11 160 IPR006780 GO:0007275
Vivi2g01318 211 FunFam Axial regulator YABBY 4 102 169 - -
Vivi2g01318 211 Gene3D High mobility group box domain 105 161 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01318 Vivi-Chr2 56495250 56497462 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01318 2 211 C2C2-YABBY Transcription Factor Family AT1G23420 57.522 1.46e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vivi2g01318 YABBY 1.7e-61 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01318 K25796 - gmx:100804172 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g01318 2 56495250 56497462 Vivi2g01318 2 56495250 56497462 ECH