Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01276 ATGATCAAAACTATGGCTTATTCTCCGATTCAACTTCTTTCACTTCTTCTCCCTCTTCTATCATCTTCATTTATAGCAACTGTTTTCACCTTTGAAGTTTCAATAAAAGACACTTACATAGAACCTTTTAAATGTTCTACAAAGATCAAAACATGCCATGCATCACTCTACCACATAAACTACAATCACAACATAGAACAACTAGCCGATTTTTACTCCGTCGATCCTTCCGAAATCAAACCGATAATCCGTAGCACAAAACAAGATTACCTTATACAAGTGCCTTGTTCTTGCCAAGACACCATTGACCTTAACGGTTATTTCTATGACACAGCCTACAAAGTGAGTCCTAATGAGAGTTTTATGAATGTTAACAATATTGTTTATAGTGGTCAAACTTGGCATGTCAATGACGATTTGGTTGCAAATGAGAATGTAACAATACATATTCCTTGTGGATGTTCAGAACTTGAGTCACAAATTGTTGTTACATATACTGTGCAGCAAGGTGATACACCAACTTCAATTTCTCTTTTGTTAAATGCTAATATTGATGGCATGGTGAAATTGAATGAAATTTTGGGTCCTAACCCAACTTTCATTGATATTGGTTGGGTTTTATATGTTCCCAAGGAATTAAAAGGGTCACCACTTTCCAACGAAAAAGAAAAGAAACACAAGTGGGTGATAATTATTGGTATCTTAGTGAGTGTGACATTACTTTCAGTTATTACCTTGATGGTTTTCATTCTCAGAAGAAATAAAGGCTATGGAAGTAGCAAAAATGATCCAAAAACTTTCTCTAAAAGATCACTTGCCAATAGAACCATTTCTCTAAGGAATCAAGAATTTCATAAAGAATATATGGAAGATGCGACGCAATTCGATTCAGAAAGGCCAGTGATTTATGATTTTGAAGAGATTGAAGATGCTACAAATAACTTTGATGAAACTAGAAGGATTGGAGTTGGTGGATATGGCACTGTCTATTTTGGAATGCTAGAAGATAAAGAAGTTGCTGTGAAGAAAATGAAGTCTACCAAATCCAAAGAGTTCTATGCAGAACTCAAAGCCTTATGCAAGATCCATCATATTAACATTGTAGAGTTGTTGGGATATGCAAGTGGAGATGATCACCTTTATTTGGTGTATGAGTATGTTCCTAATGGATCTCTAAGTGAACACCTTCATGATCCACTATTAAAAGGTCACCAGCCTCTTTCTTGGTGTGCTAGAGCTCAAATTGCACTTGATTCAGCAAAAGGTATTGAATACATACACGATTACACCAAAGCGCGATATGTGCACCGTGATATAAAGACTTGTAATATTCTTCTTGATGCAAAGCTCAGAGCAAAGGTAGCGGATTTTGGACTTGCAAAGCTCGTAGAACGAACCAACGATGAAGAATTTTTAGCAACAAGGCTTGTTGGAACACCAGGCTACCTTCCACCTGAATCGGTGAAGGAACTTCAAGTGACGATAAAAACCGATGTATTTGCATTCGGCGTGGTTCTGTCGGAGTTGATAACGGGGAAACGAGCATTGTTTCGCGACAACCAAGAAGCTAATAATATGAAATCACTGATTGCAGTTGTGAACAAAATATTTCAAGATGATGAGCCAGTGATTGCTTTAGAAGAAGCTGTAGATGGAAATCTTCTACGTAGTTATCCTATAGAAGATGTCTACAAGATGGGAGAGTTATCACATTGGTGTTTGAGTGAAAATCCAGTGGACAGACCAGAAATGAAAGAGATTGTTGGGGTGTTGGCAAAGATTGTAATGTCTTCAATAGAATGGGAAGCGTCACTAGGTGGGGACAGTCAAGTTTTCAGCGGTGTATTTGATGGAAGATGA 1860 0.3731 MIKTMAYSPIQLLSLLLPLLSSSFIATVFTFEVSIKDTYIEPFKCSTKIKTCHASLYHINYNHNIEQLADFYSVDPSEIKPIIRSTKQDYLIQVPCSCQDTIDLNGYFYDTAYKVSPNESFMNVNNIVYSGQTWHVNDDLVANENVTIHIPCGCSELESQIVVTYTVQQGDTPTSISLLLNANIDGMVKLNEILGPNPTFIDIGWVLYVPKELKGSPLSNEKEKKHKWVIIIGILVSVTLLSVITLMVFILRRNKGYGSSKNDPKTFSKRSLANRTISLRNQEFHKEYMEDATQFDSERPVIYDFEEIEDATNNFDETRRIGVGGYGTVYFGMLEDKEVAVKKMKSTKSKEFYAELKALCKIHHINIVELLGYASGDDHLYLVYEYVPNGSLSEHLHDPLLKGHQPLSWCARAQIALDSAKGIEYIHDYTKARYVHRDIKTCNILLDAKLRAKVADFGLAKLVERTNDEEFLATRLVGTPGYLPPESVKELQVTIKTDVFAFGVVLSELITGKRALFRDNQEANNMKSLIAVVNKIFQDDEPVIALEEAVDGNLLRSYPIEDVYKMGELSHWCLSENPVDRPEMKEIVGVLAKIVMSSIEWEASLGGDSQVFSGVFDGR 619
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01276 619 SUPERFAMILY LysM domain 163 210 IPR036779 -
Vivi2g01276 619 ProSiteProfiles Protein kinase domain profile. 315 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g01276 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Vivi2g01276 619 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 41 615 IPR044812 GO:0019199|GO:0045087
Vivi2g01276 619 FunFam Kinase family protein 291 386 - -
Vivi2g01276 619 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524
Vivi2g01276 619 ProSiteProfiles LysM domain profile. 163 209 IPR018392 -
Vivi2g01276 619 CDD LysM 163 209 IPR018392 -
Vivi2g01276 619 SUPERFAMILY Protein kinase-like (PK-like) 299 591 IPR011009 -
Vivi2g01276 619 Pfam LysM domain 165 210 IPR018392 -
Vivi2g01276 619 Pfam Protein kinase domain 316 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g01276 619 Gene3D Phosphorylase Kinase; domain 1 293 386 - -
Vivi2g01276 619 FunFam PTI1-like tyrosine-protein kinase 3 387 605 - -
Vivi2g01276 619 Gene3D Transferase(Phosphotransferase) domain 1 387 604 - -
Vivi2g01276 619 SMART LysM_2 164 210 IPR018392 -
Vivi2g01276 619 Gene3D LysM domain 158 217 IPR036779 -
Vivi2g01276 619 SMART serkin_6 315 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vivi2g01276 Vivi-Chr2 54258798 54262684 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01276 295 619 Receptor kinase-like Gene Family AT1G51940 51.057 2.46e-114 354
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vivi2g01276 Pkinase 1.1e-48 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01276 - - gmx:100800907 920.613