Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01266 ATGGCTAGGAGTGAATTAGGGTCAACCACAATTAAACTGAATTTGTTGATCAATCACTTTAAAATGAATTTAACAAACCCGGTGACATTACTAAATATTTCACACAATACAGTGTTGATATTTCTTATCCTGGTCAAGGGTATAGAATTGAATGATAAAGATTTTGCATACGATGGTTCAAAAGCATTACTCACTCTTGGCTCTCTATCTCAGAAAGACGAGCTTGAGTTTGATGTTGTTCTCAAAGATGTAGCATCAAACAGAGGTGGTTTTCGTCTAGGCCGCAATTACTTCCCCAATGATGATAGACGTCTCGATCGTATGAAAGATGACATGTTTCGTGCCTTAGGGAAATTTGCAAGCTTTAGAACAACACAAACCGACCTTTATCTCAATATAGATATGTCAACAACGATTGTCTTTCCTCCGACAGTTCTCGATTTCTTGGCTTTTAATCAAAATACTACTGCTAGTGGTCTCTCTATTGACTGGAAAAAGGCTACAGAGACTCTACAAAATTTAAGAATACAAGCCACTCACTCAAAGAGAGAGTATGTGATTACTAGGCTTAGTGATCTCTTATGTGAAGATAAAATGTTTAGTATGAAGAAGAAAATGGACGGGATTGGAGAAGTCTATTTTAAAGAGATAAGTGTTTTTAAATATTTCACCGAGAGGAAGGCGATCTCGCTGACGTATTCTGATAAATATCCGTGTGTTAATGTTCGAAAGCCCAACATACTAGTTTATCTACCAATTGAGCTTTGCATGCTTTCTCTTAAACGGTACATCGAAGATCTTCAGTGTTACCAACAAGCATCTTTTGTTATGCATTCGAGACTCTCGCCACAACGACGAAAGGCTGCTTTGTCTCATTATCAGATATCGGATCGGGTTGGGAAGGTTGTTTATCGTGTGGCGTTACCGTCAAATCTTGCTAATTTGCACGATGTGTTTCATGTGTCACAACTCCGAAAGTATGTTTCAGATCCGTCTCATGTGATTCAGATAGACGATGTGCAAGTGCGTGATAATCTCACAGTGGAGATGATGCCTGTGCGAATTGTGGATCGTGAGATGAAGGTTCTTAGAGGTAAGGAGTTTGCGTTGGTGAAAGTTGTCTGGTTAGGAGCTGCTGGCGAAAGCTCGGCCTGA 1155 0.3957 MARSELGSTTIKLNLLINHFKMNLTNPVTLLNISHNTVLIFLILVKGIELNDKDFAYDGSKALLTLGSLSQKDELEFDVVLKDVASNRGGFRLGRNYFPNDDRRLDRMKDDMFRALGKFASFRTTQTDLYLNIDMSTTIVFPPTVLDFLAFNQNTTASGLSIDWKKATETLQNLRIQATHSKREYVITRLSDLLCEDKMFSMKKKMDGIGEVYFKEISVFKYFTERKAISLTYSDKYPCVNVRKPNILVYLPIELCMLSLKRYIEDLQCYQQASFVMHSRLSPQRRKAALSHYQISDRVGKVVYRVALPSNLANLHDVFHVSQLRKYVSDPSHVIQIDDVQVRDNLTVEMMPVRIVDREMKVLRGKEFALVKVVWLGAAGESSA 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01266 384 Gene3D paz domain 139 262 - -
Vivi2g01266 384 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN 279 375 - -
Vivi2g01266 384 SMART DUF1785_2 91 143 IPR014811 -
Vivi2g01266 384 ProSiteProfiles PAZ domain profile. 168 260 IPR003100 GO:0005515
Vivi2g01266 384 CDD PAZ_argonaute_like 144 258 - -
Vivi2g01266 384 Pfam PAZ domain 147 258 IPR003100 GO:0005515
Vivi2g01266 384 Pfam Argonaute linker 1 domain 94 140 IPR014811 -
Vivi2g01266 384 SUPERFAMILY PAZ domain 145 291 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01266 Vivi-Chr2 53732967 53743469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01266 17 297 Eukaryotic Initiation Factors Gene Family AT1G48410 22.674 3.80e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01266 K11593 - vvo:131649063 751.51