Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01257 ATGCAGGTCAAAATCTTTGGGATTCGAGGTTGCTTTTTTGGCATTGCAAACATGATTCTGGTTAAGAGAATGAGAGAAACATTATACTCTTCCCTCCTTCTTCAGGATATATCGTTTTTTGACAATGAAACAGTAGGAGATTTGACAAGTAGACTTGGGGCAGATTGTCAGCAAGTTTCAAGGGTTATTGGAAATGATCTTAATTTGATATTGCGCAATGTCCTTCAGGGAGGAGGTTCATTAATCTACTTGCTGGTTTTGTCTTGGCCACTTGGTTTATGCACATTGGTGATATGCTCCATATTAGCAGCGGTCATGTTACGTTATGGAAGGTACCAGAAGAAGGCAGCAAGGTTGATCCAAGAAGTCACTGCTTCTGCTAATAATGTAGCTCAAGAGACATTCTCTCTAATTAGAACCGTTCGAGTTTATGGAACAGAAGAAGAAGAACAGGGAAGGTACAAATTGTGGCTGGACAAATTAGCTGACATAAGCTTGCGACAAAGCGCTGCGTATGGATTTTGGAATTTTAACTTCAACACTCTTTATCACTCAACTCAGGTTATTGCCGTGCTATTTGGAGGAATGTCTATTCTAGCGGGTCATATTACAGCAGAGAAACTTACTAAGTTTATACTATACAGTGAATGGTTAATTTATTCAACCTGGTGGGTGGGCGACAATATATCCAATTTGATGCAGTCAGTTGGAGCTAGTGAAAAAGTGTTCAATTTAATGGATCTCTCGCCTAGCAGCCAATTTATAACAGAAGGAATGAGGTTGCAAAGTTTAACGGGGCATTTGGAGTTTGTAAATGTATCTTTTCACTATTCTTCGAGGCCAACGGTATCTGTAGTGCAACATGTAAACTTTGTTGTCAATCCTAGCGAGGTGGTTGCCATTGTTGGTCTTAGTGGCAGCGGAAAAAGCACATTGGTGAATCTTTTGCTCCGTCTCTATGAGCCTACTAGTGGTCAGATTTTGATAGATGGTGTCCCTCATAAAGACTTGGATGTCATGTGGTGGAGAGAGAGAATCGGATATGTGGGACAGGAACCAAAGCTATTCCGGATGGATATTAGCTCGAACATCAGATATGGATGTACCCGAGATGTAAAGCAGGAGGATATTGAGTGGGCTGCGAAGCAGGCCTATGCTCACGACTTTATCTCAGCACTTCCTAATGGTTATGAAACACTTGTTGATGATGATCTTTTAAGTGGCGGACAAAAGCAGCGAATTGCTATTGCTAGGGCCATTCTTAGGGACCCAAAAATATTAATCCTTGATGAAGCCACTAGTGCATTGGATGCTGAAAGTGAACACAATGTGAAGGGTGTTCTTCGATCTGTTAGAAGTGATTCAGCATCAAGGAGAAGTGTCATAGTCATTGCACACAGGCTTTCTACCATACAAGCTGCTGACAGGATTGTGGTTATGGATAGGGGTCAAATTGTTGAGAATGGAAGTCACAGGGAGCTTCTCTTGAAAGACGGTTTATATGCTCGGTTGACTAGAAAACAGGCTGATTCCATGGAGTGA 1542 0.4163 MQVKIFGIRGCFFGIANMILVKRMRETLYSSLLLQDISFFDNETVGDLTSRLGADCQQVSRVIGNDLNLILRNVLQGGGSLIYLLVLSWPLGLCTLVICSILAAVMLRYGRYQKKAARLIQEVTASANNVAQETFSLIRTVRVYGTEEEEQGRYKLWLDKLADISLRQSAAYGFWNFNFNTLYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDNISNLMQSVGASEKVFNLMDLSPSSQFITEGMRLQSLTGHLEFVNVSFHYSSRPTVSVVQHVNFVVNPSEVVAIVGLSGSGKSTLVNLLLRLYEPTSGQILIDGVPHKDLDVMWWRERIGYVGQEPKLFRMDISSNIRYGCTRDVKQEDIEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARAILRDPKILILDEATSALDAESEHNVKGVLRSVRSDSASRRSVIVIAHRLSTIQAADRIVVMDRGQIVENGSHRELLLKDGLYARLTRKQADSME 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01257 513 Gene3D ABC transporter type 1, transmembrane domain 13 265 IPR036640 GO:0005524|GO:0016020
Vivi2g01257 513 SUPERFAMILY ABC transporter transmembrane region 7 250 IPR036640 GO:0005524|GO:0016020
Vivi2g01257 513 Pfam ABC transporter 287 434 IPR003439 GO:0005524
Vivi2g01257 513 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 8 234 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g01257 513 CDD ABC_6TM_TAP 7 242 - -
Vivi2g01257 513 FunFam Multidrug ABC transporter ATP-binding protein 260 512 - -
Vivi2g01257 513 Pfam ABC transporter transmembrane region 8 219 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g01257 513 PANTHER ABC TRANSPORTER B FAMILY 8 505 IPR039421 -
Vivi2g01257 513 Gene3D - 266 509 IPR027417 -
Vivi2g01257 513 ProSitePatterns ABC transporters family signature. 406 420 IPR017871 GO:0005524|GO:0016887
Vivi2g01257 513 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 268 507 IPR003439 GO:0005524
Vivi2g01257 513 SMART AAA_5 295 490 IPR003593 GO:0016887
Vivi2g01257 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 259 508 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01257 Vivi-Chr2 53369320 53375451 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01257 23 513 Calmodulin-binding Proteins AT2G36910 34.400 3.36e-72 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01257 - - gmx:100775951 897.501