Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01256 ATGTCTCAACTACTCACAGGCACACATCCTTACCTCCCTCCACCTCCAATCCTTCACCACCGCATCAAACCTCTAACCACAGTCTCCTCCAATACCCGCTTCAATTTCGCACCAAATCGAATCACTCTATCCTACTCCAACCGCATTCTCTTACCCTCTCCGTTAAAGTCGGCGTCCATCAACGAAGTCTCCGTCCAGAACACTCCAGAAGCTTCCAGCATTTCTGATGAAATTCTCGGCAGAATACGAGAATTTGTTAAGTTCCTTCCTTCAATTTTCCCGGGAGGAGCCTGGTGGAACTTCTCCGATGAGGTGGATGCTTCCATTTTCGGTCAACCGGTTACGGTCTGGTATGCTTTGGGTAAAATGTGGAACCTTGTTGCTCGTGATAGATGGGTCATTTTCGCTGCTTTCACTGCTCTTATAATTGCAGCAGTTTCGGAGATTTCTATACCGCATTTCTTGACAGCTTCAATATTCTCAGCACAGGGTGGGGATATTACTGTTTTTCATAGGAATGTGCGGTTGTTGATTCTCTTGTGTGGTATTTCTGGAATATGCAGTGGGATTCGAGGTTGCTTTTTTGGCATTGCAAACATGATTCTGGTTAAGAGAATGAGAGAAACATTATACTCTTCCCTCCTTCTTCAGGATATATCGTTTTTTGACAATGAAACAGTAGGAGATTTGACAAGTAGACTTGGGGCAGATTGTCAGCAAGTTTCAAGGGTTATTGGAAATGATCTTAATTTGATATTGCGCAATGTCCTTCAGGGAGGAGGTTCATTAATCTACTTGCTGGTTTTGTCTTGGCCACTTGGTTTATGCACATTGGTGATATGCTCCATATTAGCAGCGGTCATGTTACGTTATGGAAGGTACCAGAAGAAGGCAGCAAGGTTGATCCAAGAAGTCACTGCTTCTGCTAATAATGTAGCTCAAGAGACATTCTCTCTAATTAGAACCGTTCGAGTTTATGGAACAGAAGAAGAAGAACAGGGAAGGTACAAATTGTGGCTGGACAAATTAGCTGACATAAGCTTGCGACAAAGCGCTGCGTATGGATTTTGGAATTTTAACTTCAACACTCTTTATCACTCAACTCAGGTTATTGCCGTGCTATTTGGAGGAATGTCTATTCTAGCGGGTCATATTACAGCAGAGAAACTTACTAAGTTTATACTATACAGTGAATGGTTAATTTATTCAACCTGGTGGGTGGGCGACAATATATCCAATTTGATGCAGTCAGTTGGAGCTAGTGAAAAAGTGTTCAATTTAATGGATCTCTCGCCTAGCAGCCAATTTATAACAGAAGGAATGAGGTTGCAAAGTTTAACGGGGCATTTGGAGTTTGTAAATGTATCTTTTCACTATTCTTCGAGGCCAACGGTATCTGTAGTGCAACATGTAAACTTTGTTGTCAATCCTAGCGAGGTGGTTGCCATTGTTGGTCTTAGTGGCAGCGGAAAAAGCACATTGGTGAATCTTTTGCTCCGTCTCTATGAGCCTACTAGTGGTCAGATTTTGATAGATGGTGTCCCTCATAAAGACTTGGATGTCATGTGGTGGAGAGAGAGAATCGGATATGTGGGACAGGAACCAAAGCTATTCCGGATGGATATTAGCTCGAACATCAGATATGGATGTACCCGAGATGTAAAGCAGGAGGATATTGAGTGGGCTGCGAAGCAGGCCTATGCTCACGACTTTATCTCAGCACTTCCTAATGGTTATGAAACACTTGTTGATGATGATCTTTTAAGTGGCGGACAAAAGCAGCGAATTGCTATTGCTAGGGCCATTCTTAGGGACCCAAAAATATTAATCCTTGATGAAGCCACTAGTGCATTGGATGCTGAAAGTGAACACAATGTGAAGGGTGTTCTTCGATCTGTTAGAAGTGATTCAGCATCAAGGAGAAGTGTCATAGTCATTGCACACAGGCTTTCTACCATACAAGCTGCTGACAGGATTGTGGTTATGGATAGGGGTCAAATTGTTGAGAATGGAAGTCACAGGGAGCTTCTCTTGAAAGACGGTTTATATGCTCGGTTGACTAGAAAACAGGCTGATTCCATGGAGTGA 2088 0.4291 MSQLLTGTHPYLPPPPILHHRIKPLTTVSSNTRFNFAPNRITLSYSNRILLPSPLKSASINEVSVQNTPEASSISDEILGRIREFVKFLPSIFPGGAWWNFSDEVDASIFGQPVTVWYALGKMWNLVARDRWVIFAAFTALIIAAVSEISIPHFLTASIFSAQGGDITVFHRNVRLLILLCGISGICSGIRGCFFGIANMILVKRMRETLYSSLLLQDISFFDNETVGDLTSRLGADCQQVSRVIGNDLNLILRNVLQGGGSLIYLLVLSWPLGLCTLVICSILAAVMLRYGRYQKKAARLIQEVTASANNVAQETFSLIRTVRVYGTEEEEQGRYKLWLDKLADISLRQSAAYGFWNFNFNTLYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDNISNLMQSVGASEKVFNLMDLSPSSQFITEGMRLQSLTGHLEFVNVSFHYSSRPTVSVVQHVNFVVNPSEVVAIVGLSGSGKSTLVNLLLRLYEPTSGQILIDGVPHKDLDVMWWRERIGYVGQEPKLFRMDISSNIRYGCTRDVKQEDIEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARAILRDPKILILDEATSALDAESEHNVKGVLRSVRSDSASRRSVIVIAHRLSTIQAADRIVVMDRGQIVENGSHRELLLKDGLYARLTRKQADSME 695
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01256 695 FunFam Multidrug ABC transporter ATP-binding protein 442 694 - -
Vivi2g01256 695 Pfam ABC transporter transmembrane region 136 401 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g01256 695 ProSitePatterns ABC transporters family signature. 588 602 IPR017871 GO:0005524|GO:0016887
Vivi2g01256 695 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 441 690 IPR027417 -
Vivi2g01256 695 Pfam ABC transporter 469 616 IPR003439 GO:0005524
Vivi2g01256 695 Gene3D - 440 695 IPR027417 -
Vivi2g01256 695 Gene3D ABC transporter type 1, transmembrane domain 118 435 IPR036640 GO:0005524|GO:0016020
Vivi2g01256 695 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 135 416 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi2g01256 695 SMART AAA_5 477 672 IPR003593 GO:0016887
Vivi2g01256 695 FunFam ABC transporter B family member 26, chloroplastic 116 435 - -
Vivi2g01256 695 PANTHER ABC TRANSPORTER B FAMILY 129 687 IPR039421 -
Vivi2g01256 695 SUPERFAMILY ABC transporter transmembrane region 122 432 IPR036640 GO:0005524|GO:0016020
Vivi2g01256 695 CDD ABC_6TM_TAP 137 424 - -
Vivi2g01256 695 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 450 689 IPR003439 GO:0005524
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vivi2g01256 Vivi-Chr2 53369320 53376065 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01256 205 695 Calmodulin-binding Proteins AT2G36910 34.400 1.81e-70 248
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01256 - - gmx:100813359 1078.54