Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi2g01256 | ATGTCTCAACTACTCACAGGCACACATCCTTACCTCCCTCCACCTCCAATCCTTCACCACCGCATCAAACCTCTAACCACAGTCTCCTCCAATACCCGCTTCAATTTCGCACCAAATCGAATCACTCTATCCTACTCCAACCGCATTCTCTTACCCTCTCCGTTAAAGTCGGCGTCCATCAACGAAGTCTCCGTCCAGAACACTCCAGAAGCTTCCAGCATTTCTGATGAAATTCTCGGCAGAATACGAGAATTTGTTAAGTTCCTTCCTTCAATTTTCCCGGGAGGAGCCTGGTGGAACTTCTCCGATGAGGTGGATGCTTCCATTTTCGGTCAACCGGTTACGGTCTGGTATGCTTTGGGTAAAATGTGGAACCTTGTTGCTCGTGATAGATGGGTCATTTTCGCTGCTTTCACTGCTCTTATAATTGCAGCAGTTTCGGAGATTTCTATACCGCATTTCTTGACAGCTTCAATATTCTCAGCACAGGGTGGGGATATTACTGTTTTTCATAGGAATGTGCGGTTGTTGATTCTCTTGTGTGGTATTTCTGGAATATGCAGTGGGATTCGAGGTTGCTTTTTTGGCATTGCAAACATGATTCTGGTTAAGAGAATGAGAGAAACATTATACTCTTCCCTCCTTCTTCAGGATATATCGTTTTTTGACAATGAAACAGTAGGAGATTTGACAAGTAGACTTGGGGCAGATTGTCAGCAAGTTTCAAGGGTTATTGGAAATGATCTTAATTTGATATTGCGCAATGTCCTTCAGGGAGGAGGTTCATTAATCTACTTGCTGGTTTTGTCTTGGCCACTTGGTTTATGCACATTGGTGATATGCTCCATATTAGCAGCGGTCATGTTACGTTATGGAAGGTACCAGAAGAAGGCAGCAAGGTTGATCCAAGAAGTCACTGCTTCTGCTAATAATGTAGCTCAAGAGACATTCTCTCTAATTAGAACCGTTCGAGTTTATGGAACAGAAGAAGAAGAACAGGGAAGGTACAAATTGTGGCTGGACAAATTAGCTGACATAAGCTTGCGACAAAGCGCTGCGTATGGATTTTGGAATTTTAACTTCAACACTCTTTATCACTCAACTCAGGTTATTGCCGTGCTATTTGGAGGAATGTCTATTCTAGCGGGTCATATTACAGCAGAGAAACTTACTAAGTTTATACTATACAGTGAATGGTTAATTTATTCAACCTGGTGGGTGGGCGACAATATATCCAATTTGATGCAGTCAGTTGGAGCTAGTGAAAAAGTGTTCAATTTAATGGATCTCTCGCCTAGCAGCCAATTTATAACAGAAGGAATGAGGTTGCAAAGTTTAACGGGGCATTTGGAGTTTGTAAATGTATCTTTTCACTATTCTTCGAGGCCAACGGTATCTGTAGTGCAACATGTAAACTTTGTTGTCAATCCTAGCGAGGTGGTTGCCATTGTTGGTCTTAGTGGCAGCGGAAAAAGCACATTGGTGAATCTTTTGCTCCGTCTCTATGAGCCTACTAGTGGTCAGATTTTGATAGATGGTGTCCCTCATAAAGACTTGGATGTCATGTGGTGGAGAGAGAGAATCGGATATGTGGGACAGGAACCAAAGCTATTCCGGATGGATATTAGCTCGAACATCAGATATGGATGTACCCGAGATGTAAAGCAGGAGGATATTGAGTGGGCTGCGAAGCAGGCCTATGCTCACGACTTTATCTCAGCACTTCCTAATGGTTATGAAACACTTGTTGATGATGATCTTTTAAGTGGCGGACAAAAGCAGCGAATTGCTATTGCTAGGGCCATTCTTAGGGACCCAAAAATATTAATCCTTGATGAAGCCACTAGTGCATTGGATGCTGAAAGTGAACACAATGTGAAGGGTGTTCTTCGATCTGTTAGAAGTGATTCAGCATCAAGGAGAAGTGTCATAGTCATTGCACACAGGCTTTCTACCATACAAGCTGCTGACAGGATTGTGGTTATGGATAGGGGTCAAATTGTTGAGAATGGAAGTCACAGGGAGCTTCTCTTGAAAGACGGTTTATATGCTCGGTTGACTAGAAAACAGGCTGATTCCATGGAGTGA | 2088 | 0.4291 | MSQLLTGTHPYLPPPPILHHRIKPLTTVSSNTRFNFAPNRITLSYSNRILLPSPLKSASINEVSVQNTPEASSISDEILGRIREFVKFLPSIFPGGAWWNFSDEVDASIFGQPVTVWYALGKMWNLVARDRWVIFAAFTALIIAAVSEISIPHFLTASIFSAQGGDITVFHRNVRLLILLCGISGICSGIRGCFFGIANMILVKRMRETLYSSLLLQDISFFDNETVGDLTSRLGADCQQVSRVIGNDLNLILRNVLQGGGSLIYLLVLSWPLGLCTLVICSILAAVMLRYGRYQKKAARLIQEVTASANNVAQETFSLIRTVRVYGTEEEEQGRYKLWLDKLADISLRQSAAYGFWNFNFNTLYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDNISNLMQSVGASEKVFNLMDLSPSSQFITEGMRLQSLTGHLEFVNVSFHYSSRPTVSVVQHVNFVVNPSEVVAIVGLSGSGKSTLVNLLLRLYEPTSGQILIDGVPHKDLDVMWWRERIGYVGQEPKLFRMDISSNIRYGCTRDVKQEDIEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARAILRDPKILILDEATSALDAESEHNVKGVLRSVRSDSASRRSVIVIAHRLSTIQAADRIVVMDRGQIVENGSHRELLLKDGLYARLTRKQADSME | 695 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi2g01256 | 695 | FunFam | Multidrug ABC transporter ATP-binding protein | 442 | 694 | - | - | |
Vivi2g01256 | 695 | Pfam | ABC transporter transmembrane region | 136 | 401 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vivi2g01256 | 695 | ProSitePatterns | ABC transporters family signature. | 588 | 602 | IPR017871 | GO:0005524|GO:0016887 | |
Vivi2g01256 | 695 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 441 | 690 | IPR027417 | - | |
Vivi2g01256 | 695 | Pfam | ABC transporter | 469 | 616 | IPR003439 | GO:0005524 | |
Vivi2g01256 | 695 | Gene3D | - | 440 | 695 | IPR027417 | - | |
Vivi2g01256 | 695 | Gene3D | ABC transporter type 1, transmembrane domain | 118 | 435 | IPR036640 | GO:0005524|GO:0016020 | |
Vivi2g01256 | 695 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 135 | 416 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vivi2g01256 | 695 | SMART | AAA_5 | 477 | 672 | IPR003593 | GO:0016887 | |
Vivi2g01256 | 695 | FunFam | ABC transporter B family member 26, chloroplastic | 116 | 435 | - | - | |
Vivi2g01256 | 695 | PANTHER | ABC TRANSPORTER B FAMILY | 129 | 687 | IPR039421 | - | |
Vivi2g01256 | 695 | SUPERFAMILY | ABC transporter transmembrane region | 122 | 432 | IPR036640 | GO:0005524|GO:0016020 | |
Vivi2g01256 | 695 | CDD | ABC_6TM_TAP | 137 | 424 | - | - | |
Vivi2g01256 | 695 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 450 | 689 | IPR003439 | GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi2g01256 | Vivi-Chr2 | 53369320 | 53376065 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi2g01256 | 205 | 695 | Calmodulin-binding Proteins | AT2G36910 | 34.400 | 1.81e-70 | 248 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi2g01256 | - | - | gmx:100813359 | 1078.54 |