Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01249 ATGTTCGGACTCTCCCAACCCGCTCCGGATTCTCCCAAATCCACCATCAAATTCCTCTGTAGCTACGGCGGCAAAATCCTCCCTCGTTATCCCGACGGCAAACTCCGCTACCTCGGCGGCCATACACGCGTCGTCTCCGTCGATCGTTCTGTTCAATTTTCCGAACTGCTTCCGAAGCTGGAAGAACTCTGTGGCTCATCCGTGACGCACCTCCGCTGCCAGTTACCCGCCGAAGACCTCGACGCTTTGGTTTCCATAACCTCCGACGAGGATCTCGTCAACCTAATCGAAGAATACGACCGTACCGCATCGCCGCAACTGCCGTTGAAGATCAAAGCGTTCATTTCACCGCCGAGATCTTTGAACAAGGTTTCCAAACCTCCGTTACCAACTATGTCAAAAACAGCATCCGTCTCTTCTTCATCTTCCGCGTCGTCGACATCTTCTTCATCATCTTTTACTGGTGGAGGTTCTGTTCGGAAGTATACGACGGCGCCGCCGGTAGTTAGCCGTTGCGTTCATCATACGTCTCAACAGAATGTAAATCATGTGAATATGGAAAGATCTTCCGGGCGGAATATTCCCCTGCAGCGCAACTGCAATCACTGGCAATAA 615 0.5171 MFGLSQPAPDSPKSTIKFLCSYGGKILPRYPDGKLRYLGGHTRVVSVDRSVQFSELLPKLEELCGSSVTHLRCQLPAEDLDALVSITSDEDLVNLIEEYDRTASPQLPLKIKAFISPPRSLNKVSKPPLPTMSKTASVSSSSSASSTSSSSSFTGGGSVRKYTTAPPVVSRCVHHTSQQNVNHVNMERSSGRNIPLQRNCNHWQ 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01249 204 Pfam PB1 domain 32 110 IPR000270 GO:0005515
Vivi2g01249 204 SUPERFAMILY CAD & PB1 domains 32 120 - -
Vivi2g01249 204 CDD PB1_UP2 19 115 - -
Vivi2g01249 204 MobiDBLite consensus disorder prediction 122 158 - -
Vivi2g01249 204 PANTHER OS05G0427100 PROTEIN-RELATED 10 163 - -
Vivi2g01249 204 MobiDBLite consensus disorder prediction 126 158 - -
Vivi2g01249 204 Gene3D - 34 113 - -
Vivi2g01249 204 MobiDBLite consensus disorder prediction 176 204 - -
Vivi2g01249 204 SMART PB1_new 30 118 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01249 Vivi-Chr2 53020495 53024892 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01249 16 115 MAP Kinase Kinase Kinase AT5G57610 49.000 5.84e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01249 - - psat:127119257 355.525