Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01242 ATGGAAGAAGCCCTCAACCGTCTCAACGGAACAACCCCAACTACCATCACAGAACCCACCTCAAAAAAACCAACAACCGCCGCAAACAAACGAGCATTACGCGAAACCACCGCCACCGCCAACAACGGCGGTGCCCTCAGGTACCGCGGAGTACGCCGCCGACCATGGGGCCGTTACGCTGCTGAAATAAGAGACCCTCAGTCTAAAGAACGCCGCTGGTTAGGTACCTTCGACACTGCTGAAGAAGCTGCTTGTGCTTACGACTGCGCCGCACGTGCCATGCGTGGCATCAAAGCTCGTACGAACTTCGTCTATCCAACTTCTCCTCCTCCTTCTTCCACTTTTCCTTCCTTCAACTTCCCAAAACATTCTTATTCTCATTCTCATTCACAAACTCTTGATAAAACCACTGCAAACAACCGCCACGTGTCGTCTTCTGGTTGGTCATCCGCCTCTGAAACAAACGGTGCTGAGTTCGGTAACCATAGAAACCCTTCAACTACCTCACTTGACATGCTTCTGTTTCGTGAGTTCATCAACTCTTCAAATTCCAACTCTTCTTTCGTTTCTTCTTCCCCTCAGAATCACTTTCACGATAACTTTTCATATTCTTACAACAACAATAACAACATAGGTAATTCTAGTACTAGTTCAACCTCTAGTTCTGGTTCTACTTTTCTTCCTAGTTGTTGTATGGTGAATTCCTGTGGTGGGGGTGTTAATAGCAACAACAACATGAACAGCACTTTTGTCGGTTTAGATGGTTCAAAAACTTCTGCTGAAGAAGGTAACGAGTTTTTTCCTAAAGAGTCTTCTGATTCTGGATTATTGGAAGAGATTGTCAACAGGTTCTTACCAAAACCTAAGCAAGAGATTAAGAATGAAGGTTTGGGAAAGACTTTCTACGACCCTTTTGTTTCTGCTGCACCTGTCTATGATCACACGCTTGAGATGAAAAAGGGGATTCAAAAGAATGATTTTTTAGGTGGTGGATTTGATCAAAGTGATTTCAACATGCAACAGTTTGAGAATTTTAATAATGGGTTTCATAGTTCTTTTCAGTCCGTGCCTTTTGGAAATGAACAAGTCATGGTGAATCATGCTGAGAATTCCGGTTTTCAGTATCAAGAGCTTCTTAATGCTTTTGCACTCAGGATGCAAAATGCTTAA 1170 0.435 MEEALNRLNGTTPTTITEPTSKKPTTAANKRALRETTATANNGGALRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGIKARTNFVYPTSPPPSSTFPSFNFPKHSYSHSHSQTLDKTTANNRHVSSSGWSSASETNGAEFGNHRNPSTTSLDMLLFREFINSSNSNSSFVSSSPQNHFHDNFSYSYNNNNNIGNSSTSSTSSSGSTFLPSCCMVNSCGGGVNSNNNMNSTFVGLDGSKTSAEEGNEFFPKESSDSGLLEEIVNRFLPKPKQEIKNEGLGKTFYDPFVSAAPVYDHTLEMKKGIQKNDFLGGGFDQSDFNMQQFENFNNGFHSSFQSVPFGNEQVMVNHAENSGFQYQELLNAFALRMQNA 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01242 389 MobiDBLite consensus disorder prediction 1 31 - -
Vivi2g01242 389 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Vivi2g01242 389 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 32 210 - -
Vivi2g01242 389 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Vivi2g01242 389 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Vivi2g01242 389 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Vivi2g01242 389 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Vivi2g01242 389 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
Vivi2g01242 389 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
Vivi2g01242 389 MobiDBLite consensus disorder prediction 126 164 - -
Vivi2g01242 389 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Vivi2g01242 389 MobiDBLite consensus disorder prediction 7 31 - -
Vivi2g01242 389 FunFam Ethylene-responsive transcription factor 2 47 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01242 Vivi-Chr2 51890644 51892090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01242 1 288 AP2-EREBP Transcription Factor Family AT1G24590 36.721 3.65e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi2g01242 AP2 3.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01242 - - psat:127121366 597.43