Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01217 ATGGCGGACGTTGAAGTCGATGCTACTGCCGCGGCCGGGATCCCAAAGAAGAGAACGTTTAAGAAGTTCAGTTTCAGAGGCGTCGATTTGGATGCACTTCTGGACATGTCCACTGATGAGCTCGTCAAGCTCTTCAGTGCACGTGCTCGTAGAAGGTTCCAGAGAGGTCTCACCAGAAAGCCCATGGCTCTCATCAAAAAGCTTCGCAAAGCGAAAAGGGAGGCACCACCTGGTGAGAAGCCAGAACCTGTTAGGACCCATCTTCGTAACATGATTATTGTACCCGAGATGATCGGAAGCATCATTGGAGTGTACAACGGAAAGACCTTTAACCAGGTTGAAATCAAACCTGAGATGATTGGGCATTACCTTGCTGAGTTCTCAATTTCATACAAGCCTGTTAAGCATGGTAGACCCGGTATTGGTGCTACTCACTCCTCTAGGTTCATTCCTCTCAAGTGA 462 0.4848 MADVEVDATAAAGIPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01217 153 ProSitePatterns Ribosomal protein S19 signature. 106 130 IPR020934 GO:0003723
Vivi2g01217 153 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 10 153 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vivi2g01217 153 PRINTS Ribosomal protein S19 family signature 106 118 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vivi2g01217 153 PRINTS Ribosomal protein S19 family signature 118 133 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vivi2g01217 153 PRINTS Ribosomal protein S19 family signature 86 105 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vivi2g01217 153 Pfam Ribosomal protein S19 51 136 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vivi2g01217 153 Gene3D 30s Ribosomal Protein S19; Chain A 10 153 IPR023575 GO:0003735|GO:0005840|GO:0006412
Vivi2g01217 153 NCBIfam 30S ribosomal protein S19 20 153 IPR005713 GO:0003735|GO:0006412|GO:0015935
Vivi2g01217 153 Hamap 30S ribosomal protein S19 [rpsS]. 49 142 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vivi2g01217 153 FunFam 40S ribosomal protein S15 10 153 - -
Vivi2g01217 153 SUPERFAMILY Ribosomal protein S19 56 137 IPR023575 GO:0003735|GO:0005840|GO:0006412
Vivi2g01217 153 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 11 153 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01217 Vivi-Chr2 50858265 50859801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01217 1 153 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 88.889 1.06e-94 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01217 K02958 - gmx:100499657 296.589