Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01209 ATGGACGACGTAAAAGACAAAATGAAAGGCTTCATGAAGAAAGTCAATAACCCTTTCTCTTCTTCATCCTCTGGCAAATTCAAAGGCCAAGGTAGAGTCCTAGGCTCTTCATCATCATCATCATCAACTACACCGCCAAATTCCATTTCTACCCCTCGCCCTTCTCCTCTCAATTCCAATCCCATTTCTAACCCTAAACCCAAACCCAAACCCAAACCTACTCCACCGATTGTTTCAGCTTCGGATGATAGCAGAATCGAAAAAGCTCGTAAACCTGGAGATGGATTTGATCCGTTTGATTCTTTGGTTACTTCATCTCAGAGATCTCGAAATGGTTATTCGGTAAATGTATATGAATGTCCGATTTGCAAAACACCGTTTAGATCGGAAGATGAGGTTTCTGAGCATGTTGAAAGTTGTTTGAGTAATAGAGTTGAAAATATTGATGATGGAAAATTGGTGGAGACTGAGACTGAAGATGTTGTTGAGATTGATACTAATACTGAATTGGAGATTTGTGTTGGGAGTTATGTTTCGGGGAATCCGAGTGAAGGATCGGTTGATATTGTTTTGAAGTTGTTGAGGAATATTGTTAGGGAGCCGGAGAATGTTAAGTTTAGGAAGATTAGGTTGAGTAATCCCAAGATTAAGGAAGCTGTTGCTGAGGTTAGTGGTGGGGTTGAGTTGTTGGGGTTTTTGGGGTTTGAGCTTAAGGAGGAGAATGGAGAGACATGGGCAGTGATGGAGGTTCCGAACGAGGAGAAGATAGGGTTGATTAAGAAAGCAGTTGTGTTGTTGGAACCACAATTGGTGCAGGAACCTCCAAAGAAAGAGAGTTTGGTGTCTATAGCTTCGGTTGAGAAAGTAGCCGATGCCGAACCGAAAAAGATCGACAGACAGGTGAAGGTCTTCTTTGCTGTTTCTGAAAGCGTTGCATCTAAAATAGAGCTACCGGATTCCTTCTACAAACGATCAGTTGATGAGGTGAGAAGAGATGCTGACTTAAGGAGAAAAAAGTTTGAAGAGTCTCAGCTCTTAATCCCAAAGTCACTTAAAGAAAAACAAGCTAAAGCTGCGAAGAGGCGATACACAAAAACTATTATTAGGATTCAGTTTCCTGATGGAATTGTACTTCAAGGTGTATTTGCCCCATGGGAACCAACTACTGCTTTGTACGAGTTTGTCAGCTCTGCATTAAAAGAACAGGGTTTAGAATTCGAGCTAATGCATCCTGTAGTTGTCCAACGGCGAGTTATCCCATGTTTTCCAAAAGCAGGACAAAAAGCCAAAACAATAGAGGAAGAAGACTTGGTGCCTTCTGCTCTAATCAAGTTCAAGCCCCTAGAAACAGATTCTGTTGTTTTCACTAGTCTCAAAAATGAATTGCTTGAAATCAGTGAACCACTTGTAAATGGTTAA 1419 0.4123 MDDVKDKMKGFMKKVNNPFSSSSSGKFKGQGRVLGSSSSSSSTTPPNSISTPRPSPLNSNPISNPKPKPKPKPTPPIVSASDDSRIEKARKPGDGFDPFDSLVTSSQRSRNGYSVNVYECPICKTPFRSEDEVSEHVESCLSNRVENIDDGKLVETETEDVVEIDTNTELEICVGSYVSGNPSEGSVDIVLKLLRNIVREPENVKFRKIRLSNPKIKEAVAEVSGGVELLGFLGFELKEENGETWAVMEVPNEEKIGLIKKAVVLLEPQLVQEPPKKESLVSIASVEKVADAEPKKIDRQVKVFFAVSESVASKIELPDSFYKRSVDEVRRDADLRRKKFEESQLLIPKSLKEKQAKAAKRRYTKTIIRIQFPDGIVLQGVFAPWEPTTALYEFVSSALKEQGLEFELMHPVVVQRRVIPCFPKAGQKAKTIEEEDLVPSALIKFKPLETDSVVFTSLKNELLEISEPLVNG 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01209 472 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 471 - -
Vivi2g01209 472 CDD PUB 183 267 - -
Vivi2g01209 472 FunFam UBX domain-containing protein 6 355 446 - -
Vivi2g01209 472 MobiDBLite consensus disorder prediction 15 57 - -
Vivi2g01209 472 SUPERFAMILY PUG domain-like 181 266 IPR036339 -
Vivi2g01209 472 SUPERFAMILY Ubiquitin-like 336 445 IPR029071 -
Vivi2g01209 472 MobiDBLite consensus disorder prediction 58 76 - -
Vivi2g01209 472 Gene3D - 355 448 - -
Vivi2g01209 472 ProSiteProfiles UBX domain profile. 361 445 IPR001012 GO:0005515
Vivi2g01209 472 MobiDBLite consensus disorder prediction 1 107 - -
Vivi2g01209 472 Pfam UBX domain 362 412 IPR001012 GO:0005515
Vivi2g01209 472 Gene3D - 180 266 - -
Vivi2g01209 472 Pfam PUB domain 184 258 IPR018997 -
Vivi2g01209 472 SMART PGNneu 185 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01209 Vivi-Chr2 50735235 50738961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01209 1 393 C2H2 Transcription Factor Family AT2G01650 57.214 2.99e-145 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi2g01209 UBX 3.1e-05 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01209 K14011 - gmx:100779271 601.282