Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01190 ATGGATAAACTCATATTCAATTGTTGCATTGCATACTTTCTCCTTTTCTCTTTCTTGTTTGTACATGGCAAAGAATTATCATGCAATCAAACACCATACCCTCATGTGTGTGACCATTACATTGCAACCACTAATACACTATCAACCCCACATTCTTCTTCTTTCCATGATATTGCCATTAAGGTTACCATGGACCAAGCTATTGAAGCATACAAACTTGTGTCCACCATGGATTTGAATAACTTCAAAGACTATAGAGCCAAGTCAGCATGGGAAGATTGTCTAGAGCTTTATGAGGATACAATTTATCAACTTAATCGCTCCATAAACTCAAACAATTTAAATGACAAATTAACTTGGCAAAGTGCTTCCATTACCAATCATCAAACTTGTCAAAATGGTTTCATTGATTTCAACCTTCCCTCTCACTTAAACTACTTTCCTTCCATCTTAACCAACTTCACTAAACTGCTTAGCAACTCTTTGTCCATAAGCAACACTTTAGCCTCCTCATCATTGTCAAATACTAAACAAAATGGAGGAAGAAGGTTGTTATCAGAAGGATTTCCACATTGGCTTTCTGGTTCAGATAGAAAGCTTCTGCAAACAACACCAAGTGCTGATATTGTGGTGGCACAAGATGGAAGTGGAAACTATAAAACAATATCAGAGGGTGTAGCTGCTGCTAAGGGAAGTGGAAAAGGAAGAGTTGTGATTCATGTGAAAGCAGGTGTATATAAAGAGAATATTGATATCAAGAAAACAGTGAAAAACATAATGATATTTGGAGATGGAATGGATTCCACAATTGTTACCGGTAATCATAACGTTCAAGATGGCTCTACAACTTTCCGTTCAGCTACTTTTGCTGTTATGGGAGATGGATTCATAGCAAAAGATATGACCTTCGAGAATACAGCCGGACCACAAAAGCACCAAGCGGTGGCTCTCCGTTCCGGCGCCGATTACTCCGTTTTCTACCGTTGTTCCTTCAAAGGATATCAGGACACTCTCTACGTCTACGCCAACCGTCATTTCTACCGGGACTGTAACATCTACGGAACAGTCGATTTCATCTTTGGCAACGCCGTTACCGTTCTTCAAAACTGCAACATCTTAATTAGAAAACCGATGAGCAACCAACAGAACAGTATAACGGCACAGGGAAGAACAGATCCAAACGAGAACACGGGAATAGTGATCCATAACTGCCGTATAACCGCCGCAGGTGATTTGAAACCATATCAGAATTCAGTGAAAAGTTATCTTGGTAGACCGTGGCAGAAGTATTCAAGAACAGTTGTGATGAAAAGTAACATAGATGGTGTTATAAACTCTCAAGGTTGGGCTCCATGGAGTGGTGGTTTTGCTTTGAGTACACTATACTATGGTGAATATATGAACGTTGGCGATGGTGCTAATACAGATGGGAGAGTGAATTGGTCTGGTTTTCATGTTATTACAAATCCATCTGAAGCAGTTAAATTCTCAGTTGGTAATTTCTTAGCTGGTGAGACTTGGATATCTGGAAGTGGTGTGCCGTTTGATGCAGGCTTGTGA 1560 0.3987 MDKLIFNCCIAYFLLFSFLFVHGKELSCNQTPYPHVCDHYIATTNTLSTPHSSSFHDIAIKVTMDQAIEAYKLVSTMDLNNFKDYRAKSAWEDCLELYEDTIYQLNRSINSNNLNDKLTWQSASITNHQTCQNGFIDFNLPSHLNYFPSILTNFTKLLSNSLSISNTLASSSLSNTKQNGGRRLLSEGFPHWLSGSDRKLLQTTPSADIVVAQDGSGNYKTISEGVAAAKGSGKGRVVIHVKAGVYKENIDIKKTVKNIMIFGDGMDSTIVTGNHNVQDGSTTFRSATFAVMGDGFIAKDMTFENTAGPQKHQAVALRSGADYSVFYRCSFKGYQDTLYVYANRHFYRDCNIYGTVDFIFGNAVTVLQNCNILIRKPMSNQQNSITAQGRTDPNENTGIVIHNCRITAAGDLKPYQNSVKSYLGRPWQKYSRTVVMKSNIDGVINSQGWAPWSGGFALSTLYYGEYMNVGDGANTDGRVNWSGFHVITNPSEAVKFSVGNFLAGETWISGSGVPFDAGL 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01190 519 ProSitePatterns Pectinesterase signature 2. 352 361 IPR033131 -
Vivi2g01190 519 SMART PMEI_2 21 164 IPR006501 GO:0004857
Vivi2g01190 519 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 168 IPR035513 -
Vivi2g01190 519 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 170 IPR035513 -
Vivi2g01190 519 Gene3D - 202 519 IPR012334 -
Vivi2g01190 519 CDD PMEI-like_3 26 170 - -
Vivi2g01190 519 Pfam Plant invertase/pectin methylesterase inhibitor 27 164 IPR006501 GO:0004857
Vivi2g01190 519 ProSitePatterns Pectinesterase signature 1. 233 252 IPR018040 -
Vivi2g01190 519 NCBIfam pectinesterase inhibitor domain 27 168 IPR006501 GO:0004857
Vivi2g01190 519 FunFam Pectinesterase 202 519 - -
Vivi2g01190 519 PANTHER PECTINESTERASE 16 509 - -
Vivi2g01190 519 SUPERFAMILY Pectin lyase-like 203 518 IPR011050 -
Vivi2g01190 519 SMART complete 241 422 IPR006633 -
Vivi2g01190 519 FunFam Pectinesterase 25 168 - -
Vivi2g01190 519 Pfam Pectinesterase 208 504 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01190 Vivi-Chr2 50483351 50485585 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01190 27 519 Carbohydrate Esterase AT1G23200 53.321 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01190 - - gmx:100817350 813.913