Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01189 ATGCAAACTCCATTTTCTAATCATATGGATAGACTCTTATTCAATTGTTTCCTTGCATACTTTCTGTTTTTTTCTTTCTTGTTTGTGCATGGCAAAGAATTATCATGCAATCAAACACCATACCCTCAAGTGTGTAACCATTACATTGGAACCACTAATACACTATCAACCATACATTCTTCTTCCTTCCATGATATTGCCATTGAGGTTACCATGAACCAAGCTATTGAAGCATACAAACTTGTGTCAACCATGGATTTGAATAATTTCAAAGACAATAGAGCCAAGTCAGCATGGCAAGATTGTGTAGAACTTTATGCGGATACAATTTATCAACTTAATCGCTCCATAAACTCAAATAATTTAGATGACAAGTTAACTTGGCAAAGTGCTTCCATTACCAATCATCAAACTTGTCAAAATGGTTTCATTGATTTCAACCTTCCTTCTCACTTAACCTACTTTCCTTCCATCTTAACCAACTTCACTAAACTGCTTAGCAACTCCTTGTCCATTAGCAACACTTTAGCCTCTTCATCATTGTCTAATACTAAACAAAATGGAGGAAGACGGTTGTTATCGGATAAATTTCCACATTGGCTTTCAGGTTCAGATAGAAAACTTTTGCAATCACCACCAAGTGCTGATATTGTGGTGGCACAAGATGGAAGTGGGGACTATAAGACAATCTCAGAAGGTGTAGCTGCTGCTAAGGGAAGTGGAAAAGGAAGAGTTATTATTCATGTGAAAGCAGGTGTATATAAAGAGAACATTGATATAAAGAAAACAGTGAAAAACATAATGATATTCGGAGATGGAATGGATTCCACAATTGTTACCGGTAATCATAATGCTCAAGATGGTTCTACTACTTTCCGTTCAGCTACTTTTGCTGTTATGGGAGATGGATTCATAGCAAAAGATATGACCTTCGAGAACACTGCCGGACCACAAAAGCACCAAGCGGTGGCTCTCCGTTCTGGCGCCGATCACTCCGTTTTCTACCGTTGCTCCTTCATAGGCTACCAAGATACTCTTTACGTCTATGCCAACCGTCAATTCTACCGTGACTGTAACATCTACGGAACTGTCGATTTCATCTTCGGAAATGCTGTAACCGTTCTTCAAAACTGCAACATCTTAATCAGAAAACCGATGAGCAACCAACAGAACTCGGTAACGGCACAGGGAAGAACAGATCCAAATGAGAACACCGGAATAGTGATCCATAACTGCCGTATAACTGCCGCGGGTGATTTGAAACCATATCAGAATTCAGTGAAAAGTTATCTTGGTAGACCGTGGCAGAAGTATTCAAGAACAGTTGTGATGAAAAGTAACATAGATGGTGTTATAAATCCACAAGGTTGGACTCCATGGAATGGTGGTTTTGCCTTGAGTACACTTTATTATGGTGAATATATGAATGTTGGTGAGGGTGCTAATACAAAGGGGAGAGTGAATTGGCCTGGTTTTCATGTAATTACAAATCCTTCAGAAGCAGTTAAATTTTCTGTTGGTAACTTTTTGGCGGGTGAATCTTGGATTTCTGGTGTGCCGTTTGATGCAGGTTTATGA 1578 0.3916 MQTPFSNHMDRLLFNCFLAYFLFFSFLFVHGKELSCNQTPYPQVCNHYIGTTNTLSTIHSSSFHDIAIEVTMNQAIEAYKLVSTMDLNNFKDNRAKSAWQDCVELYADTIYQLNRSINSNNLDDKLTWQSASITNHQTCQNGFIDFNLPSHLTYFPSILTNFTKLLSNSLSISNTLASSSLSNTKQNGGRRLLSDKFPHWLSGSDRKLLQSPPSADIVVAQDGSGDYKTISEGVAAAKGSGKGRVIIHVKAGVYKENIDIKKTVKNIMIFGDGMDSTIVTGNHNAQDGSTTFRSATFAVMGDGFIAKDMTFENTAGPQKHQAVALRSGADHSVFYRCSFIGYQDTLYVYANRQFYRDCNIYGTVDFIFGNAVTVLQNCNILIRKPMSNQQNSVTAQGRTDPNENTGIVIHNCRITAAGDLKPYQNSVKSYLGRPWQKYSRTVVMKSNIDGVINPQGWTPWNGGFALSTLYYGEYMNVGEGANTKGRVNWPGFHVITNPSEAVKFSVGNFLAGESWISGVPFDAGL 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01189 525 FunFam Pectinesterase 33 176 - -
Vivi2g01189 525 ProSitePatterns Pectinesterase signature 1. 241 260 IPR018040 -
Vivi2g01189 525 CDD PMEI-like_3 34 178 - -
Vivi2g01189 525 PANTHER PECTINESTERASE 28 517 - -
Vivi2g01189 525 SUPERFAMILY Pectin lyase-like 211 519 IPR011050 -
Vivi2g01189 525 ProSitePatterns Pectinesterase signature 2. 360 369 IPR033131 -
Vivi2g01189 525 FunFam Pectinesterase 210 525 - -
Vivi2g01189 525 NCBIfam pectinesterase inhibitor domain 35 176 IPR006501 GO:0004857
Vivi2g01189 525 Pfam Pectinesterase 216 512 IPR000070 GO:0030599|GO:0042545
Vivi2g01189 525 Pfam Plant invertase/pectin methylesterase inhibitor 35 172 IPR006501 GO:0004857
Vivi2g01189 525 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 178 IPR035513 -
Vivi2g01189 525 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 176 IPR035513 -
Vivi2g01189 525 Gene3D - 211 525 IPR012334 -
Vivi2g01189 525 SMART PMEI_2 29 172 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01189 Vivi-Chr2 50465110 50467339 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01189 35 525 Carbohydrate Esterase AT1G23200 52.083 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01189 - - gmx:100816802 785.408