Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01185 ATGGCTAAACTCATATACAATTGTTGCATTGCATACTTTATCCTTTTCTCTTTCTTGTTTGTGCAAGCCAAAGAATTATCATGCAATCAAACACCATACCCTCATGTCTGTAACCATTACATTGGAACCACTAATACACTATCAACCCTAGACTCTATTTCCTTCCATGATGTTTCCCTTAAGGTTACCATGGACCAAGCTATTGAAGCATACAAACTTGTGTCAACCATGAATTTGAATAATTTCAAAGACAATAGAGCCAAGTCAGCATGGCAAGATTGTGTAGAACTTTATGAGGATACGATTTATCAACTTAATCGCTCCATAAACTCAAACAATTTAAATGACAAGTTAACTTGGCAAAGTGCTTCCATTACCAATCATCAAACTTGTCAAAATGGTTTCATTGATTTCAACCTTCCTTCTCACTTAAACTACTTCCCTTCCATGTTGACAAACTTTACTAAACTTATTAGCAATTCCCTGTCCATTAGCAACACTCTAGCTTCTTCGACCCCGTCTTCATTACCGTCCTCCTCATTGTCAAATACTAAACAAAATGGAGGTAGAAGATTGTTATCATCAGATGGATTTCCCTATTGGCTTTCTGGTTCAGATAGAAAACTTTTGCAGACAACACCAAGTGCTGATATTGTGGTGGCACAAGATGGAAGTGGGGACTATAAGACAATATCAGAAGGTGTAGCTGCTGCTAAGGGAAGTGGAAAAGGAAGAGTTGTGATTCATGTGAAAGCAGGTGTATATAAAGAGAACATAGATATAAAGAAGACAGTGAAGAACATAATGATATTTGGAGATGGAATGGATTCCACAATTGTTACGGGTAATCATAACGTTCAAGATGGCTCTACAACTTTCCGTTCAGCTACTTTTGCTGTTATGGGAGATGGATTCATAGCAAAAGATATGACCTTCGAGAATACAGCCGGACCACAAAAGCACCAAGCGGTGGCTCTCCGTTCCGGCGCCGATTACTCCGTTTTCTACCGTTGTTCCTTCAAAGGATATCAGGATACTCTCTACGTCTACGCCAACCGTCAATTCTACCGTGATTGTAACATCTACGGAACTGTCGATTTCATCTTCGGCAACGCTGTAACAGTCCTTCAAAACTGCAACATCTTAATTAGAAAACCGATGAGCAACCAACAGAACTCGGTAACCGCACAGGGAAGAACAGATCCAAACGAGAACACGGGAATAGTGATCCATAACTGCCGTATAACCGCCGCAGGTGATTTGAAACCATATCAGAATTCAGTGAAAAGTTATCTTGGTAGACCGTGGCAGAAGTATTCAAGAACTGTTGTGATGAAAAGTAACATAGATGGTGTTATAAACTCTCAAGGTTGGGCTTCATGGAGTGGTGGTTTTGCTTTAAGTACACTTTATTATGGTGAATATATGAATATCGGCGATAGTGCTAATACAGATGGGAGAGTAAATTGGTCTGGTTTTCATGTAATTACAAATCCATCTGAAGCAGTTAAATTTTCAGTTGGTAATTTCTTGGCTGGTGAGTCATGGATATCTGGAAGTGGTGTGCCGTTTGATGCAGGCTTGTGA 1587 0.3963 MAKLIYNCCIAYFILFSFLFVQAKELSCNQTPYPHVCNHYIGTTNTLSTLDSISFHDVSLKVTMDQAIEAYKLVSTMNLNNFKDNRAKSAWQDCVELYEDTIYQLNRSINSNNLNDKLTWQSASITNHQTCQNGFIDFNLPSHLNYFPSMLTNFTKLISNSLSISNTLASSTPSSLPSSSLSNTKQNGGRRLLSSDGFPYWLSGSDRKLLQTTPSADIVVAQDGSGDYKTISEGVAAAKGSGKGRVVIHVKAGVYKENIDIKKTVKNIMIFGDGMDSTIVTGNHNVQDGSTTFRSATFAVMGDGFIAKDMTFENTAGPQKHQAVALRSGADYSVFYRCSFKGYQDTLYVYANRQFYRDCNIYGTVDFIFGNAVTVLQNCNILIRKPMSNQQNSVTAQGRTDPNENTGIVIHNCRITAAGDLKPYQNSVKSYLGRPWQKYSRTVVMKSNIDGVINSQGWASWSGGFALSTLYYGEYMNIGDSANTDGRVNWSGFHVITNPSEAVKFSVGNFLAGESWISGSGVPFDAGL 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01185 528 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 171 IPR035513 -
Vivi2g01185 528 Gene3D - 211 528 IPR012334 -
Vivi2g01185 528 NCBIfam pectinesterase inhibitor domain 27 168 IPR006501 GO:0004857
Vivi2g01185 528 FunFam Pectinesterase 211 528 - -
Vivi2g01185 528 SUPERFAMILY Pectin lyase-like 212 527 IPR011050 -
Vivi2g01185 528 SMART complete 250 431 IPR006633 -
Vivi2g01185 528 FunFam Pectinesterase 25 168 - -
Vivi2g01185 528 PANTHER PECTINESTERASE 14 518 - -
Vivi2g01185 528 ProSitePatterns Pectinesterase signature 1. 242 261 IPR018040 -
Vivi2g01185 528 Pfam Pectinesterase 217 513 IPR000070 GO:0030599|GO:0042545
Vivi2g01185 528 ProSitePatterns Pectinesterase signature 2. 361 370 IPR033131 -
Vivi2g01185 528 Pfam Plant invertase/pectin methylesterase inhibitor 27 164 IPR006501 GO:0004857
Vivi2g01185 528 CDD PMEI-like_3 26 169 - -
Vivi2g01185 528 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 168 IPR035513 -
Vivi2g01185 528 MobiDBLite consensus disorder prediction 171 190 - -
Vivi2g01185 528 SMART PMEI_2 21 164 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01185 Vivi-Chr2 50412405 50414868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01185 3 528 Carbohydrate Esterase AT1G23200 52.708 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01185 - - gmx:100817350 800.816