Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01159 ATGGAATTTGAAGATCATGAGGAACATGAGGAAGAGTTATGTATGGGTGCAGCGAGTTACGACTCGTTACCTAACTCGTCACGAGTTAAGATGCCAGGTGGCACTGAAGCTATTATGGTTACTCATCCACTCAGAAACATCATCAACAACAGCAACAACGGAAACAGTAACAGCAACAGCAACAACAACGGGAACAGTAACAACAATAACAACATCAGTAGCATCAGTAACAGCAACATCGGTGTCGGAAACGGAAAAGCGAGGTATAGAGAGTGTTTAAAGAATCATGCTGTCGGAATCGGAGGTCATGCTTTAGACGGTTGCGGCGAGTTTATGCCGGCGGGGAATGAAGGAAGTTTGGAGTCACTAAAATGCGCTGCGTGTAACTGCCACCGTAATTTCCACCGCAAGGAGTCGGCTGACTTCACCGGAGTGGATCCTTTTCTGTTGACGCACCACCACCACCATGCGCCGCCTCAGCCGCAGTTCGCAGCTTATTATCGAACTCCGGCGGGGTACTTGCATGTTTCGGGACAGCAGAGGCCGGGGACGCTTGCTCTACCGTCTACATCCGGAGGCGGTGCAGGGACGCAGAGCACGAGGGAGGATCAAGATGAAGATATTTCGAATCCGAGCGGAGGTTCGAGTAAGAAGCGGCACCGGACGAAGTTTACGGTGGAACAGAAGGATAAGATGTTGCAGTTGGCTGAGAAATTGGGGTGGAGAATTCAGAAACATGATGAAGGTTTGGTTCAAGAATTCTGCAATGAAAGTGGTGTGAAGCGTCATGTTCTTAAGGTTTCATCTTGA 810 0.4914 MEFEDHEEHEEELCMGAASYDSLPNSSRVKMPGGTEAIMVTHPLRNIINNSNNGNSNSNSNNNGNSNNNNNISSISNSNIGVGNGKARYRECLKNHAVGIGGHALDGCGEFMPAGNEGSLESLKCAACNCHRNFHRKESADFTGVDPFLLTHHHHHAPPQPQFAAYYRTPAGYLHVSGQQRPGTLALPSTSGGGAGTQSTREDQDEDISNPSGGSSKKRHRTKFTVEQKDKMLQLAEKLGWRIQKHDEGLVQEFCNESGVKRHVLKVSS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01159 269 Gene3D - 202 268 - -
Vivi2g01159 269 Pfam ZF-HD protein dimerisation region 87 139 IPR006456 -
Vivi2g01159 269 MobiDBLite consensus disorder prediction 46 72 - -
Vivi2g01159 269 MobiDBLite consensus disorder prediction 200 228 - -
Vivi2g01159 269 MobiDBLite consensus disorder prediction 182 199 - -
Vivi2g01159 269 NCBIfam homeobox domain, ZF-HD class 217 267 IPR006455 -
Vivi2g01159 269 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 89 138 IPR006456 -
Vivi2g01159 269 MobiDBLite consensus disorder prediction 177 228 - -
Vivi2g01159 269 MobiDBLite consensus disorder prediction 1 25 - -
Vivi2g01159 269 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 58 267 - -
Vivi2g01159 269 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 88 138 IPR006456 -
Vivi2g01159 269 SUPERFAMILY Homeodomain-like 209 267 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01159 Vivi-Chr2 48122371 48123704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01159 85 267 ZF-HD Transcription Factor Family AT4G24660 52.174 3.06e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vivi2g01159 ZF-HD_dimer 3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01159 - - gmx:100795063 271.166