Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01141 ATGAGCGAGAGAGAAAATTGGACTCAAGTGAGGTCGCGGAGGAGGAGAGTTAGAGAGCTGGGTCACGATAAGACTGACAGAAATACAGGGATCTATAATGGAATCACAACATGCTACGTAGAGAATATTCCGGAGGACATTAACGAGAAAGAGATGGAGAGAAAGTTCACTAGATGGGGAAAAGTGGTAGATGTGTATATTGCAAACAGAAGAAACAAGAGGGGAAGATTATTTGGGTTTGTTAGATTTGAGGGAGTGGAGGATCAACAACGGTTAGAGAACCAACTCAGAAATATTTGGTTCGGGTCGTATAAATCATGGGTAAACATTTCAAAATTTGAAAGAAAGACATGGATGGAGGTCAGGGATAAGAAAGTAAGAAGAGATAATACATTATCCAGGCAAAAAGAAGGTAACAGAAGTAGAGAAGTTTGGTGCAAGCATAGAGCTGGGAGGGCAGAAGGCATAATAAAGGAAGGAATTTCGTACGCAGATGCCATCAAAAATAAAGGTAGCAATAAGTTTACATCAGAAGACTATTACAGACGTCGTAACGAAGCTAAAGATTTACAAAGGGTAGATTCACAAATGTGTGTCGGGATTTCAATATCAGTTTCTGAAGAAGAGATGCTATGGGCAAAAAGAGGTTATGTAGGGTGTGTCCGCAACGTAGAGGAGATTCAAAGTCTGCAACAACGCATGTTTGACGAAGGCATTAACACAATCAAAGTCATTCCTTTGGGTGGAGAAAAAGTTTTCTTAAATTTAGACGAAGAAGAAGACTTCAGCGTTTTAGTGAAGGAATCAAATCACTTATTCAATAGGTGGTTCAGTGTGGTTAGAGCTTGGGAGTCTAGAGACGTGTCGGCGGCGAGATTCATATGGTGTCGTATATACGGTGTACCGGTACATGCGTGGAGGAAAAAAGTATTTTCAATTATATCCAACTCACTTGGAAGGCTAATAAAGGTTGATGCTCCAACAGAAAATATGGAAAGACTGGATATAGCCCGAGTACTGATTCGCACGCCGCTCTTAGAATTCATTAACAAGACTAAAAGAGTGCAGATAAACAATGAGATCTTCACTATTCGAATAACAGAGGAGATTTGTGAAGGATAG 1122 0.402 MSERENWTQVRSRRRRVRELGHDKTDRNTGIYNGITTCYVENIPEDINEKEMERKFTRWGKVVDVYIANRRNKRGRLFGFVRFEGVEDQQRLENQLRNIWFGSYKSWVNISKFERKTWMEVRDKKVRRDNTLSRQKEGNRSREVWCKHRAGRAEGIIKEGISYADAIKNKGSNKFTSEDYYRRRNEAKDLQRVDSQMCVGISISVSEEEMLWAKRGYVGCVRNVEEIQSLQQRMFDEGINTIKVIPLGGEKVFLNLDEEEDFSVLVKESNHLFNRWFSVVRAWESRDVSAARFIWCRIYGVPVHAWRKKVFSIISNSLGRLIKVDAPTENMERLDIARVLIRTPLLEFINKTKRVQINNEIFTIRITEEICEG 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01141 373 SMART rrm1_1 37 109 IPR000504 GO:0003723
Vivi2g01141 373 PANTHER DUF4283 DOMAIN PROTEIN 164 371 - -
Vivi2g01141 373 Pfam Domain of unknown function (DUF4283) 222 341 IPR025558 -
Vivi2g01141 373 Gene3D - 35 121 IPR012677 -
Vivi2g01141 373 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 103 IPR000504 GO:0003723
Vivi2g01141 373 CDD RRM_SF 39 102 - -
Vivi2g01141 373 SUPERFAMILY RNA-binding domain, RBD 29 112 IPR035979 GO:0003676
Vivi2g01141 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 113 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01141 Vivi-Chr2 46894812 46895933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01141 33 117 Eukaryotic Initiation Factors Gene Family AT2G36660 29.412 8.32e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01141 - - vvo:131648999 743.036