Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01127 ATGGCGAGGGAGAAGATTCAGATAAAGAAGATCGAGAACGCAACGGCGAGGCAAGTGACGTTTTCGAAGAGAAGAAGAGGTTTGTTCAAGAAGGCTGAAGAGCTTTCAGTTCTGTGTGATGCTGATGTTGCTCTCATCATTTTTTCTTCTACTGGGAAGCTTTTTGAATACTCCAACTTAAGCATGAGGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAATTTGTCAAAGATGGAAGAACCCTCTCTCGAGCTGCAGCTAGTTGAAAACAGCAACTGTACGAGATTGAACAAGGAAATTGCTGAGAAGAGTCATCAATTAAGGCAGATGAGAGGAGAGGATCTTCAAGGTATGAATGTTGAACAATTGCAACAATTGGAGAGGTCTCTTGAAATTGGCTTGGGACGTATAATAGAAAACAAGGGAGAGAAGATTATGATGGAGATAAATGATCTCCAAAGAAAGGGAAGACAACTGATGGAAGAGAATGATCGACTAAAGCGACATGTGGCGGGCATGATGAATAACGGCAAAATGGTTGGAGGAGTTGAATATGAGAATGTGGTTATTGAAGAAGGTCAATCCTCAGAATCTGTCACTAACGTTTACAACTCCACTGGTCCTCCACAAGACTATGAGAGTTCAGACACATCTCTTAAATTAGGGCTTCCATATGCCGGATGA 687 0.4163 MAREKIQIKKIENATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYSNLSMREILERHHLHSKNLSKMEEPSLELQLVENSNCTRLNKEIAEKSHQLRQMRGEDLQGMNVEQLQQLERSLEIGLGRIIENKGEKIMMEINDLQRKGRQLMEENDRLKRHVAGMMNNGKMVGGVEYENVVIEEGQSSESVTNVYNSTGPPQDYESSDTSLKLGLPYAG 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01127 228 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi2g01127 228 MobiDBLite consensus disorder prediction 196 228 - -
Vivi2g01127 228 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi2g01127 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi2g01127 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi2g01127 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi2g01127 228 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Vivi2g01127 228 FunFam Transcription factor, MADS-box 13 83 - -
Vivi2g01127 228 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Vivi2g01127 228 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Vivi2g01127 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi2g01127 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi2g01127 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi2g01127 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi2g01127 228 Coils Coil 94 114 - -
Vivi2g01127 228 MobiDBLite consensus disorder prediction 196 218 - -
Vivi2g01127 228 Coils Coil 150 170 - -
Vivi2g01127 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01127 Vivi-Chr2 46192295 46196362 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01127 1 228 MADS-box Gene Family AT2G22540 68.333 6.90e-113 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi2g01127 K-box 1.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01127 - - gmx:100789126 367.851