Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01125 ATGGCGAGGGAGAAGATTCAGATAAAGAAGATCGAGAACGCAACGGCGAGGCAAGTGACGTTTTCGAAGAGAAGAAGAGGTTTGTTCAAGAAGGCTGAAGAGCTTTCAGTTCTGTGTGATGCTGATGTTGCTCTCATCATTTTTTCTTCTACTGGGAAGCTTTTTGAATACTCCAACTTAAGCATGAGGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAATTTGTCAAAGATGGAAGAACCCTCTCTCGAGCTGCAGCTAGTTGAAAACAGCAACTGTACGAGATTGAACAAGGAAATTGCTGAGAAGAGTCATCAATTAAGGCAGATGAGAGGAGAGGATCTTCAAGGTATGAATGTTGAACAATTGCAACAATTGGAGAGGTCTCTTGAAATTGGCTTGGGACGTATAATAGAAAACAAGGGAGAGAAGATTATGATGGAGATAAATGATCTCCAAAGAAAGGGAAGACAACTGATGGAAGAGAATGATCGACTAAAGCGACATTATATTTTGGCACCTAAGGTGGCGGGCATGATGAATAACGGCAAAATGGTTGGAGGAGTTGAATATGAGAATGTGGTTATTGAAGAAGGTCAATCCTCAGAATCTGTCACTAACGTTTACAACTCCACTGGTCCTCCACAAGACTATGAGAGTTCAGACACATCTCTTAAATTAGGGCTTCCATATGCCGGATGA 705 0.4142 MAREKIQIKKIENATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYSNLSMREILERHHLHSKNLSKMEEPSLELQLVENSNCTRLNKEIAEKSHQLRQMRGEDLQGMNVEQLQQLERSLEIGLGRIIENKGEKIMMEINDLQRKGRQLMEENDRLKRHYILAPKVAGMMNNGKMVGGVEYENVVIEEGQSSESVTNVYNSTGPPQDYESSDTSLKLGLPYAG 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01125 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 182 - -
Vivi2g01125 234 ProSiteProfiles K-box domain profile. 87 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi2g01125 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi2g01125 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi2g01125 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi2g01125 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi2g01125 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi2g01125 234 FunFam Transcription factor, MADS-box 13 83 - -
Vivi2g01125 234 Pfam K-box region 92 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi2g01125 234 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Vivi2g01125 234 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Vivi2g01125 234 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi2g01125 234 Coils Coil 94 114 - -
Vivi2g01125 234 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Vivi2g01125 234 Coils Coil 150 170 - -
Vivi2g01125 234 MobiDBLite consensus disorder prediction 203 224 - -
Vivi2g01125 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi2g01125 234 MobiDBLite consensus disorder prediction 203 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01125 Vivi-Chr2 46192291 46196366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01125 1 234 MADS-box Gene Family AT2G22540 68.333 1.90e-112 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi2g01125 K-box 3.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01125 - - gmx:100789126 364.77