Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01117 ATGGTAAGAAGCAACTTTCCACCATCATTCCTCTCTCAGACATACAAAAGCAGTATCTCAAAGCAAAGATCAAAGGCAGAGAACAAATTACTGGCAGCTAAGAAACATAGCGAAGCAGAAAGGAGACGCAGAATGCGAATCAATGGTCAATATGATACCCTTCGCACCATCCTCCCCAACTTGATCAAAGTTAGTATCATCATTATTGATAAAAAAAAGAAGGACAAGGCATCAATACTAGTGGAGACTATCAAGCAAGTGACTGAGTTGAAGAAAAAAGCATCAAAACTAGAAGATAGCAATGGTACTTCAAAGGAGGTCAAGTTTCCAAGTGGGGCAGACAGATTGAATTTGGAAAAGTGTAATGATGAGGAGGGTTTAGTGAAAGCTACATTGAGTTGTGAGGATAGGCCAGGGTTGATGTCATCTATAGCAAGAGCACTAGGGTCAATGAAAGCCAAAGTTGTAAAGGTTGAGATGGTGACAGTTGGTGGAAGAACCAAAAGTGTTTTGTGGGTTCAAGGGGTTGAAAATGAAGGTTTGAGAATGCTTAAAAGTACTTTGAAAGTTGTCATGCATAAGCCAAGCTTTAAGATGAGGTTTACTCAATAA 612 0.3954 MVRSNFPPSFLSQTYKSSISKQRSKAENKLLAAKKHSEAERRRRMRINGQYDTLRTILPNLIKVSIIIIDKKKKDKASILVETIKQVTELKKKASKLEDSNGTSKEVKFPSGADRLNLEKCNDEEGLVKATLSCEDRPGLMSSIARALGSMKAKVVKVEMVTVGGRTKSVLWVQGVENEGLRMLKSTLKVVMHKPSFKMRFTQ 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01117 203 SMART finulus 37 96 IPR011598 GO:0046983
Vivi2g01117 203 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 30 101 IPR036638 GO:0046983
Vivi2g01117 203 Gene3D - 29 109 IPR036638 GO:0046983
Vivi2g01117 203 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 31 90 IPR011598 GO:0046983
Vivi2g01117 203 Pfam ACT domain 131 201 - -
Vivi2g01117 203 Gene3D - 123 203 - -
Vivi2g01117 203 Coils Coil 80 100 - -
Vivi2g01117 203 CDD ACT_UUR-ACR-like 131 181 - -
Vivi2g01117 203 SUPERFAMILY ACT-like 129 199 IPR045865 -
Vivi2g01117 203 PANTHER TRANSCRIPTION FACTOR BHLH30 16 196 IPR045847 GO:0003700|GO:0006355
Vivi2g01117 203 Pfam Helix-loop-helix DNA-binding domain 35 87 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01117 Vivi-Chr2 45246405 45247412 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01117 19 173 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 39.241 8.06e-24 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g01117 ACT_6 1.1e-05 CL0070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01117 - - vvo:131650350 383.259