Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01103 ATGGCGTGGCTGGAGCTTGGAAAGAAGAGAATATATATGAATTTTACCAGAGCTTTGGCTACAACGTCACATAGGCACGTGGTAGGGTCTAGTTTTGCATCTATATTTGCTGAACAATCTGTTTATGCTTCAGCAAGATGCATGCCTGATTTCATCAATCGCTCTTATCTTGGTGTGGCTGATTTTTGTATTGGGAGTAAAGAAAGTGGTACACGATACTTCCATGCTAGCTCACAAGTCTGGGCAAGAAGTGACGCGGCATATGGTTTGAAGACCCCAAAGAAGGATAAGTATGTGAGAAAAGACAGTAGAAATCAGCCTCCTGTTGAAGCTCCCTATGTGCCTCGTAGTGTCACAGCAGCCAAATCTAATCCCGATAAAACAATAGAAATATTTGAAGGCATGACCCTTGTTGAACTGTCAAAGCGTTCTGGAAAATCAGTATCTTCTTTGCAAGATATTCTCACAAATGTTGGTGAAAAGATTGAATCAGAGTTTGAGCCTCTCACTATGGATGTTGCCGAGCTTGCTGCAATGGAGGTTGGCGTCAATGTTAAGAGGTTACATTCAACTGAAGGTGCAGAACTTTTACCACGTCCTGCAGTTGTAACCGTGATGGGTCATGTTGATCACGGCAAAACTTCCCTTCTCGATGCTTTACGTCTAACATCAGTGGCAGCCAAGGAAGCAGGTGGCATTACTCAGCATCTAGGTGCCTTTGTGGTGGGCATGTCATCAGGAGCATCAATCACATTTCTTGACACTCCTGGTCATGCTGCATTTAGTGCAATGCGTGCAAGAGGTGCAGCAGTCACAGATATAGTAGTGCTAGTTGTTGCTGCAGATGATGGTGTAATGCCCCAAACACTTGAAGCCGTATCCCACGCAAAATTAGCTAATGTACCAATTGTAGTTGCAATCAATAAATGTGATAAACCAGGTGCGAATCCCGAAAAAGTAAAATTACAGCTTGCTTCTGAAGGCTTGCTGCTGGAGGAGATGGGTGGGGATATTCAGGTTGTTGAAGTTTCAGCGGTTCAAAAAACTGGACTGGACAACTTAGAAGTAGCTTTACTACTTCAGGCTGATATGATGGACCTTAAAGCACGATTTGATGGGCCTGCTCAAGCATATGTGGTTGAAGCAAGACTTGACAAAGGACGGGGTCCATTGGTGACTACTATAGTGAAGGCAGGGACTCTAGTTTGTGGACAGCATGTGGTTATAGGCTCACAGTGGGGAAAAATTAGGGCTATTAAAGATACACTAGGGAGGTTAACTCAACGAGCAACTCCTGCAATGCCTGTTGAAATTGAAGGGCTCCGAGGGCTGCCAATGGCTGGTGATGATGTCATTGTTGTTCATTCTGAGGAGCGAGCTAGAATGCTTAGTTCTGGTAGGAAAAAGAAATCTGAAGAGGACAGGCTTAGGGGCAAGATGGTGCAGATTGTGCCAACTACTTCAGATGATTCTGAGGAGGAGGTTCCACTCAGGGTTGAAATGCCAGTAATTGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCCGTTACAGATGCATTGACAACTTTAAATAGTCCCCAGGTTTCTGTGAATATTGTTCATGTTGGTGTGGGGCCTATTTCTCAATCTGATGTGGACCTAGCACAGGCTTGTGGTGCATGCATAGTTGGATTCAATGTCAAGAGTCCTCCTATTTCTCTTAGCCAGGCAGCAGCTCGTGCTAGTATCAAGGTAATTCTGCACCGTGTAATTTACCACTTATTGGAAGACATAGCCAATTTAATAATTGAGAAGGCCCCGGGTACTTCCGAGACTCAGGTTGCTGGGCAAGCAGAAGTTCTGAATATCTTTGAAGTGAAAGGGAGCAAATCTAAGGGACCTGATGTGAAAATAGCTGGTTGTAAGGTTGTTGATGGTTTTGTGAACAAGTCATCAACCATGAGGCTACTAAGAAGTGGTGAAGTGGTGTTCGAAGGTCTTTGTTCATCTCTTAAGAGAGAGAAGCAGGATGTGGATTCTGTGAAGAAGGGAACTGAATGTGGACTAGTAATCAGTAACTGTTCTGATTTTCAGATTGGGGATGTTGTCCAATGCTTAGAACAAGTAGTAAGGAAGCCCAAGTTTGTTAAGTCGGAGAGTGGCGCTGTTCGGATAGAGTGCTGA 2163 0.442 MAWLELGKKRIYMNFTRALATTSHRHVVGSSFASIFAEQSVYASARCMPDFINRSYLGVADFCIGSKESGTRYFHASSQVWARSDAAYGLKTPKKDKYVRKDSRNQPPVEAPYVPRSVTAAKSNPDKTIEIFEGMTLVELSKRSGKSVSSLQDILTNVGEKIESEFEPLTMDVAELAAMEVGVNVKRLHSTEGAELLPRPAVVTVMGHVDHGKTSLLDALRLTSVAAKEAGGITQHLGAFVVGMSSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAVSHAKLANVPIVVAINKCDKPGANPEKVKLQLASEGLLLEEMGGDIQVVEVSAVQKTGLDNLEVALLLQADMMDLKARFDGPAQAYVVEARLDKGRGPLVTTIVKAGTLVCGQHVVIGSQWGKIRAIKDTLGRLTQRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRKKKSEEDRLRGKMVQIVPTTSDDSEEEVPLRVEMPVIVKADVQGTVQAVTDALTTLNSPQVSVNIVHVGVGPISQSDVDLAQACGACIVGFNVKSPPISLSQAAARASIKVILHRVIYHLLEDIANLIIEKAPGTSETQVAGQAEVLNIFEVKGSKSKGPDVKIAGCKVVDGFVNKSSTMRLLRSGEVVFEGLCSSLKREKQDVDSVKKGTECGLVISNCSDFQIGDVVQCLEQVVRKPKFVKSESGAVRIEC 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01103 720 Gene3D - 196 370 IPR027417 -
Vivi2g01103 720 NCBIfam translation initiation factor IF-2 127 703 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Vivi2g01103 720 Gene3D Translation factors 371 484 - -
Vivi2g01103 720 NCBIfam small GTP-binding protein domain 201 353 IPR005225 GO:0005525
Vivi2g01103 720 Pfam Translation-initiation factor 2 499 591 IPR023115 -
Vivi2g01103 720 SUPERFAMILY Translation proteins 372 454 IPR009000 -
Vivi2g01103 720 Gene3D - 498 601 IPR036925 -
Vivi2g01103 720 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 116 713 IPR015760 -
Vivi2g01103 720 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 198 368 IPR000795 GO:0003924|GO:0005525
Vivi2g01103 720 FunFam Translation initiation factor IF-2 195 370 - -
Vivi2g01103 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 389 IPR027417 -
Vivi2g01103 720 FunFam Translation initiation factor IF-2 498 602 - -
Vivi2g01103 720 FunFam Translation initiation factor IF-2 604 707 - -
Vivi2g01103 720 CDD IF2_mtIF2_II 374 469 IPR044145 -
Vivi2g01103 720 SUPERFAMILY Translation proteins 604 705 IPR009000 -
Vivi2g01103 720 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 498 608 IPR036925 -
Vivi2g01103 720 Gene3D Translation factors 603 705 - -
Vivi2g01103 720 CDD mtIF2_IVc 609 698 - -
Vivi2g01103 720 Pfam Elongation factor Tu GTP binding domain 203 355 IPR000795 GO:0003924|GO:0005525
Vivi2g01103 720 CDD IF2_eIF5B 202 365 - -
Vivi2g01103 720 Hamap Translation initiation factor IF-2 [infB]. 8 706 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01103 Vivi-Chr2 44842520 44848446 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01103 189 589 Eukaryotic Initiation Factors Gene Family AT1G76810 26.509 7.31e-28 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01103 K02519 - gmx:100781314 1167.14