Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01090 ATGAGAAAGAGAGAATCAAGAAGCTCTTTTCCAAGTATATTGCTTTTTGTGGCAAGGAAATCAAAAGGTGCTATTAGTGGATTATTCTATGTTCATCAACACAAACCTAGTTCATGTGAATTATTCATTATATGTGGTGGGAAGCAAGTTTTTCTAAGGGGAAACAATGATGAGAAAATCATGGAAGATGATAGTGGAGTAATGGTTGCAAAAATGAAAGATAAGGTAACTTTTAAAGATTGGTTAGACAAAATGTTTAGTGACAAAACAAGTGATTATTCTCAGAATAGACTAAGTGCTTCTCCTTCATCAATCAATTTGGTTCAAAATCAATGGGAGTTTTATCTTCAAGATATAGAAAATTATTATCAAGAATTGTTGTCATCTTCAAATTTGGAGGAAGGAATTTATGTGCAGGAGAATGATGACTTACACGTTGGTACAAAAATTGAGCCACTTGTCACTGAATTGAACAATTCTAATAAGAATACTGCAGAAAAAATTGAGATCTTACGCAAAACCATCGAGTTGAAGAGAAAAGAGACTAAGGAAAATATAGAAAGGCGCACAAAAGCTGAATGGGCAATTAGCTTATGCAATAGCAGGGCTGAAGAACTTGAAGGTAGAATAAGGCAAGAAGTGAGTACAAAGGAGAACCTAAACAAGGAACTGCATATAGAGAAAGAGCAAAGAGAAGAAATGAGAACAGAGATAATAGAGAGAAAACAAAGAATGAATTCATTAATCGAGCTTCAGTCAGAACTATCAAACAAGCTTCAAATTTCAACAATATCAAGATCAAGAGCAGAGACACATGTAGAGAGAGCAGTGAGGGAGAGAACTGACATGGTGAGGGAGATTGAGGAGTTGAGGAAGCAGAGGGACGTATTGAATCGAAGGATCGAGTTTTGTAAGCAGAAAGATGCCATAGGTATGGCAGCGAGGTTGAGTGACAATGGTGGGAATGGCACGAGTTCCGGGATGAGAGAATATAGTGAGGAGGAGTTGAGGTTGGCAACTGATAACTTTTCAGAGCGGTTGAGGTTGAAGTGCGGTCGAGAATGGACTAATGTGTATAGAGGGCGGTTTAACCACTCCACCGTTGCGATTAAGATAATGTCTTCTTTTGCTTCTTTGTCTCGAAAGGATTTTCAATCTAAGGTGAGGTTTCTTGGTGATATTAGACACCCACATCTAGTTGCTGTGGTGGGCTTTTGCTGCGAGCCGAAATGCGTAGTTTTTGAATACATGGGTAATGGGAGCTTACAAGACATGTTGTTTACCAAAAGAAGAAATAGAGGCTTACGTTGGCACGATCGAATACGAATTGCAACAGAAGTTTGCTCGGGCCTGGGCTTTCTGAATTCATCTCAACAAAGGTCTGTTACTCATTGTCATTTGAGCCCGGGACATGTCCTCCTAGACCGTAATTTAGTCGCAAAAATCACAGGCTTTGGGCTTCAAGAGTGTAACGATGACAACATTGAATGCAATGTCGAGTCAGATTTACATGTCGAAGGGGTTTTATTGATGCAACTTTTAACTGGAAGAAATTGGGCCGAGCCAATTGAGGAGCTCATGACAATGAACATGGATAGAGAAACATTGGTTAACATTCTTGATGACATGGCAGGACAATGGCCATTGGATCTAGCAAAAGAACTTCTGAACCTGGCTATGATTTGCATGTCCATGAAAAGCAAACCTAGCCCAAATCTAAGTATTGCAAAGGTCATAGAAGAACTCAATCAGATAAGAAGAAAGGGTGATGAAATAGTTGCAAAAGAAGATAGAAAGATAACCATTGGTGGATGTGTAGATAGAGAAGGCTCTAGTGATGTGCCTAGTGTTTTCCTTTGCCCTATACAACAGGAGGTAATGAAAAATCCACATGTGGCAGCAGATGGATTTTCTTATGAGCTAGAAGCAATAGAACAGTGGTTGCATTCAGGACATGATACATCACCAATGACAAACTTAAGGCTCAAACACACATCCCTTACACCAAATTACACCCTCCGTTCCTTTCTTGAAGAATGGCAGAGCAACAAATCAGCTAAAATTGAAAATTAA 2073 0.3912 MRKRESRSSFPSILLFVARKSKGAISGLFYVHQHKPSSCELFIICGGKQVFLRGNNDEKIMEDDSGVMVAKMKDKVTFKDWLDKMFSDKTSDYSQNRLSASPSSINLVQNQWEFYLQDIENYYQELLSSSNLEEGIYVQENDDLHVGTKIEPLVTELNNSNKNTAEKIEILRKTIELKRKETKENIERRTKAEWAISLCNSRAEELEGRIRQEVSTKENLNKELHIEKEQREEMRTEIIERKQRMNSLIELQSELSNKLQISTISRSRAETHVERAVRERTDMVREIEELRKQRDVLNRRIEFCKQKDAIGMAARLSDNGGNGTSSGMREYSEEELRLATDNFSERLRLKCGREWTNVYRGRFNHSTVAIKIMSSFASLSRKDFQSKVRFLGDIRHPHLVAVVGFCCEPKCVVFEYMGNGSLQDMLFTKRRNRGLRWHDRIRIATEVCSGLGFLNSSQQRSVTHCHLSPGHVLLDRNLVAKITGFGLQECNDDNIECNVESDLHVEGVLLMQLLTGRNWAEPIEELMTMNMDRETLVNILDDMAGQWPLDLAKELLNLAMICMSMKSKPSPNLSIAKVIEELNQIRRKGDEIVAKEDRKITIGGCVDREGSSDVPSVFLCPIQQEVMKNPHVAADGFSYELEAIEQWLHSGHDTSPMTNLRLKHTSLTPNYTLRSFLEEWQSNKSAKIEN 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01090 690 Coils Coil 273 307 - -
Vivi2g01090 690 Gene3D Phosphorylase Kinase; domain 1 317 416 - -
Vivi2g01090 690 ProSiteProfiles Protein kinase domain profile. 314 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g01090 690 SUPERFAMILY Protein kinase-like (PK-like) 325 568 IPR011009 -
Vivi2g01090 690 Coils Coil 154 185 - -
Vivi2g01090 690 Gene3D Transferase(Phosphotransferase) domain 1 418 595 - -
Vivi2g01090 690 CDD RING-Ubox_WDSUB1-like 615 670 - -
Vivi2g01090 690 Pfam Protein tyrosine and serine/threonine kinase 355 494 IPR001245 GO:0004672|GO:0006468
Vivi2g01090 690 SUPERFAMILY RING/U-box 611 685 - -
Vivi2g01090 690 SMART Ubox_2 617 680 IPR003613 GO:0004842|GO:0016567
Vivi2g01090 690 ProSiteProfiles U-box domain profile. 613 687 IPR003613 GO:0004842|GO:0016567
Vivi2g01090 690 Coils Coil 203 237 - -
Vivi2g01090 690 PANTHER OS02G0152300 PROTEIN 25 678 - -
Vivi2g01090 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 612 690 IPR013083 -
Vivi2g01090 690 Pfam U-box domain 614 685 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01090 Vivi-Chr2 44030798 44034707 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01090 24 687 U-box Gene Family AT5G65500 45.118 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vivi2g01090 PK_Tyr_Ser-Thr 1.7e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01090 - - gmx:100786771 947.577