Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01089 ATGGATGCAACACAAAAAGAGAAAATCTATGTTGCTATTGGTGATGATGCACAAGATGGATTCAATACTTTAAATTGGGCTCTTAAGAAATGGAATTCTCATCCAATTTCCATTGTTATTCTTCATGTGACTCATAGCATTTCTAAGGATTATGTTTATACACCATTTGGAAAACTTCCAGCAAGATCTTTGAATGATGAGAAACTTGAAGCTCTAAGAAAAGATGAGAAAGAGAGAATCAAGAAGCTCTTTTCCAAGTATATTGCTTTTTGTGGCAAGGTGTCTGCAGAAATTCTTGAAATCGAGAAATTTGACGAATCAATGCAGAAACAAATCATAGATATGATAAACGATTTAGAAATAACCAAATTGGTCATGGGATTTTCATTCATGAAGTCTTCTTTGAAATCAAAAGGTGCTATTAGTGGATTATTCTATGTTCATCAACACAAACCTAGTTCATGTGAATTATTCATTATATGTGGTGGGAAGCAAGTTTTTCTAAGGGGAAACAATGATGAGAAAATCATGGAAGATGATAGTGGAGTAATGGTTGCAAAAATGAAAGATAAGGTAACTTTTAAAGATTGGTTAGACAAAATGTTTAGTGACAAAACAAGTGATTATTCTCAGAATAGACTAAGTGCTTCTCCTTCATCAATCAATTTGGTTCAAAATCAATGGGAGTTTTATCTTCAAGATATAGAAAATTATTATCAAGAATTGTTGTCATCTTCAAATTTGGAGGAAGGAATTTATGTGCAGGAGAATGATGACTTACACGTTGGTACAAAAATTGAGCCACTTGTCACTGAATTGAACAATTCTAATAAGAATACTGCAGAAAAAATTGAGATCTTACGCAAAACCATCGAGTTGAAGAGAAAAGAGACTAAGGAAAATATAGAAAGGCGCACAAAAGCTGAATGGGCAATTAGCTTATGCAATAGCAGGGCTGAAGAACTTGAAGGTAGAATAAGGCAAGAAGTGAGTACAAAGGAGAACCTAAACAAGGAACTGCATATAGAGAAAGAGCAAAGAGAAGAAATGAGAACAGAGATAATAGAGAGAAAACAAAGAATGAATTCATTAATCGAGCTTCAGTCAGAACTATCAAACAAGCTTCAAATTTCAACAATATCAAGATCAAGAGCAGAGACACATGTAGAGAGAGCAGTGAGGGAGAGAACTGACATGGTGAGGGAGATTGAGGAGTTGAGGAAGCAGAGGGACGTATTGAATCGAAGGATCGAGTTTTGTAAGCAGAAAGATGCCATAGGTATGGCAGCGAGGTTGAGTGACAATGGTGGGAATGGCACGAGTTCCGGGATGAGAGAATATAGTGAGGAGGAGTTGAGGTTGGCAACTGATAACTTTTCAGAGCGGTTGAGGTTGAAGTGCGGTCGAGAATGGACTAATGTGTATAGAGGGCGGTTTAACCACTCCACCGTTGCGATTAAGATAATGTCTTCTTTTGCTTCTTTGTCTCGAAAGGATTTTCAATCTAAGGTGAGGTTTCTTGGTGATATTAGACACCCACATCTAGTTGCTGTGGTGGGCTTTTGCTGCGAGCCGAAATGCGTAGTTTTTGAATACATGGGTAATGGGAGCTTACAAGACATGTTGTTTACCAAAAGAAGAAATAGAGGCTTACGTTGGCACGATCGAATACGAATTGCAACAGAAGTTTGCTCGGGCCTGGGCTTTCTGAATTCATCTCAACAAAGGTCTGTTACTCATTGTCATTTGAGCCCGGGACATGTCCTCCTAGACCGTAATTTAGTCGCAAAAATCACAGGCTTTGGGCTTCAAGAGTGTAACGATGACAACATTGAATGCAATGTCGAGTCAGATTTACATGTCGAAGGGGTTTTATTGATGCAACTTTTAACTGGAAGAAATTGGGCCGAGCCAATTGAGGAGCTCATGACAATGAACATGGATAGAGAAACATTGGTTAACATTCTTGATGACATGGCAGGACAATGGCCATTGGATCTAGCAAAAGAACTTCTGAACCTGGCTATGATTTGCATGTCCATGAAAAGCAAACCTAGCCCAAATCTAAGTATTGCAAAGGTCATAGAAGAACTCAATCAGATAAGAAGAAAGGGTGATGAAATAGTTGCAAAAGAAGATAGAAAGATAACCATTGGTGGATGTGTAGATAGAGAAGGCTCTAGTGATGTGCCTAGTGTTTTCCTTTGCCCTATACAACAGGAGGTAATGAAAAATCCACATGTGGCAGCAGATGGATTTTCTTATGAGCTAGAAGCAATAGAACAGTGGTTGCATTCAGGACATGATACATCACCAATGACAAACTTAAGGCTCAAACACACATCCCTTACACCAAATTACACCCTCCGTTCCTTTCTTGAAGAATGGCAGAGCAACAAATCAGCTAAAATTGAAAATTAA 2421 0.3817 MDATQKEKIYVAIGDDAQDGFNTLNWALKKWNSHPISIVILHVTHSISKDYVYTPFGKLPARSLNDEKLEALRKDEKERIKKLFSKYIAFCGKVSAEILEIEKFDESMQKQIIDMINDLEITKLVMGFSFMKSSLKSKGAISGLFYVHQHKPSSCELFIICGGKQVFLRGNNDEKIMEDDSGVMVAKMKDKVTFKDWLDKMFSDKTSDYSQNRLSASPSSINLVQNQWEFYLQDIENYYQELLSSSNLEEGIYVQENDDLHVGTKIEPLVTELNNSNKNTAEKIEILRKTIELKRKETKENIERRTKAEWAISLCNSRAEELEGRIRQEVSTKENLNKELHIEKEQREEMRTEIIERKQRMNSLIELQSELSNKLQISTISRSRAETHVERAVRERTDMVREIEELRKQRDVLNRRIEFCKQKDAIGMAARLSDNGGNGTSSGMREYSEEELRLATDNFSERLRLKCGREWTNVYRGRFNHSTVAIKIMSSFASLSRKDFQSKVRFLGDIRHPHLVAVVGFCCEPKCVVFEYMGNGSLQDMLFTKRRNRGLRWHDRIRIATEVCSGLGFLNSSQQRSVTHCHLSPGHVLLDRNLVAKITGFGLQECNDDNIECNVESDLHVEGVLLMQLLTGRNWAEPIEELMTMNMDRETLVNILDDMAGQWPLDLAKELLNLAMICMSMKSKPSPNLSIAKVIEELNQIRRKGDEIVAKEDRKITIGGCVDREGSSDVPSVFLCPIQQEVMKNPHVAADGFSYELEAIEQWLHSGHDTSPMTNLRLKHTSLTPNYTLRSFLEEWQSNKSAKIEN 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01089 806 CDD RING-Ubox_WDSUB1-like 731 786 - -
Vivi2g01089 806 SUPERFAMILY Protein kinase-like (PK-like) 441 684 IPR011009 -
Vivi2g01089 806 Pfam U-box domain 730 801 IPR003613 GO:0004842|GO:0016567
Vivi2g01089 806 Pfam Protein tyrosine and serine/threonine kinase 471 610 IPR001245 GO:0004672|GO:0006468
Vivi2g01089 806 Coils Coil 389 423 - -
Vivi2g01089 806 Gene3D Transferase(Phosphotransferase) domain 1 534 711 - -
Vivi2g01089 806 Coils Coil 319 353 - -
Vivi2g01089 806 Coils Coil 270 301 - -
Vivi2g01089 806 PANTHER OS02G0152300 PROTEIN 9 794 - -
Vivi2g01089 806 ProSiteProfiles Protein kinase domain profile. 430 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g01089 806 SMART Ubox_2 733 796 IPR003613 GO:0004842|GO:0016567
Vivi2g01089 806 Gene3D Phosphorylase Kinase; domain 1 433 532 - -
Vivi2g01089 806 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 728 806 IPR013083 -
Vivi2g01089 806 ProSiteProfiles U-box domain profile. 729 803 IPR003613 GO:0004842|GO:0016567
Vivi2g01089 806 SUPERFAMILY RING/U-box 727 801 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01089 Vivi-Chr2 44030630 44034707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01089 3 803 U-box Gene Family AT5G65500 47.001 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vivi2g01089 PK_Tyr_Ser-Thr 2.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01089 - - gmx:100786771 1159.05