Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01078 ATGGCTCGTGCTAGTACTACTTCTACTAACTCAAATAACTGGTTATCGTTTTCACTCTCACCCATGGAAATGCCTCAGTTTGTTCAATACGACGCCGCTTCATCTGTTACCAACTCGTCTCATCAGAATCACCATCACTATTTTCTTGATAATATGTATACTAATGGATGGGGAAACGGAAACTCGAAGTCGGAAGCTGAAGCACAAGAACAATCGATTTGGTTTATGGATTCATCTAACGGTGTGAACCACCACGCTCCGCCGCCGAAGCTGGAGGATTTTCTCGGTGACAGTCAGACGGAGACGCAAGATTCTTCTCTTACACACATGTACGATCAACAACACCAACACCAACACCATCATCAAGGTTCTACTTACTTCGGTGGGGACCACCACCATCAACAACACCATCAGCACCAGCAACAGCAACAGCATCAGGATCTTAAGGCCATTACTGGCTTTCAAGCTTTTTCAAACAACTCAGGTTCTGAAGTTGATGATTCTGGTTCAATAGGAAAATCACAAGCTGCATGTAACGAGTTTGGAACTCATTGTGTTGAGTCAGGTAACGAGTTCGCTTACTCCACCGCCGCCGCAACCGCTAGTGGTGCTTTGTCTCTCGGTGTTGCTCAGAGTTCTGAAGAAACTGCTATCGTTGTTGCTGATTCAGATAGCTCGAAGAAAATAGTTGATACTTTTGGTCAGCGAACTTCGATTTACCGTGGTGTCACTAGGCATAGATGGACGGGTAGATATGAAGCCCATCTATGGGATAACAGCTGTAGAAGAGAAGGTCAAGCAAGGAAAGGGCGTCAAGTCTATTTGGGTGGATATGACAAGGAAGAAAAGGCCGCAAGATCCTATGATTTGGCTGCTCTAAAGTATTGGGGCCCTACTGCTACTACCAACTTCCCTGTTTCCAATTATGCAAAGGAATTGGAAGAGATGAAAGTCGTAACAAAGCAAGAATTCATTGCGTCATTGCGAAGGAAGAGTAGTGGCTTTTCAAGAGGAGCTTCCATCTATAGGGGTGTTACTAGGCATCACCAACAAGGTAGATGGCAAGCAAGAATTGGCCGTGTTGCCGGAAACAAAGACTTGTACTTGGGAACATTCGCTACTGAAGAAGAGGCTGCTGAAGCATATGACATTGCAGCCATCAAATTCCGAGGAGCAAATGCTGTAACAAACTTCGAGATGAACAGATATGATGTGGAAGCTATCATGAAGAGTTCTCTTCCTGTCGGCGGGGCAGCAAAACGCCTGAAACGTTCTCTGGAATCCGAACAGAAAGCTGCTGCCATTAACAACATTCAGCAGAACAATCCTCAGCAGTGTGCAGTTAACACCAATAACAGCAACAGCAACAACATCAATTTCTCAGCCATTCATCATCATCAGCAGCAGCCAATGACTTCAATCCCTTATGGAATACCATATGATTCAAACACAGCTTATTATCACCACAACCTCTTCCAACATTTTCATCCCAATTCCAATGATGGCACTGCAGAATCTGTTGTTACTTCCACCAATGCAGGAAATGGTGGAGGACTCAATGCTATGCCACCAACATCAGCAGCTGAGTTCTTTTTATGGCCTAATCAGTCTTACTGA 1617 0.4465 MARASTTSTNSNNWLSFSLSPMEMPQFVQYDAASSVTNSSHQNHHHYFLDNMYTNGWGNGNSKSEAEAQEQSIWFMDSSNGVNHHAPPPKLEDFLGDSQTETQDSSLTHMYDQQHQHQHHHQGSTYFGGDHHHQQHHQHQQQQQHQDLKAITGFQAFSNNSGSEVDDSGSIGKSQAACNEFGTHCVESGNEFAYSTAAATASGALSLGVAQSSEETAIVVADSDSSKKIVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARSYDLAALKYWGPTATTNFPVSNYAKELEEMKVVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVEAIMKSSLPVGGAAKRLKRSLESEQKAAAINNIQQNNPQQCAVNTNNSNSNNINFSAIHHHQQQPMTSIPYGIPYDSNTAYYHHNLFQHFHPNSNDGTAESVVTSTNAGNGGGLNAMPPTSAAEFFLWPNQSY 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01078 538 SMART rav1_2 239 311 IPR001471 GO:0003700|GO:0006355
Vivi2g01078 538 SMART rav1_2 341 405 IPR001471 GO:0003700|GO:0006355
Vivi2g01078 538 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 87 468 - -
Vivi2g01078 538 PRINTS Ethylene responsive element binding protein signature 240 251 IPR001471 GO:0003700|GO:0006355
Vivi2g01078 538 PRINTS Ethylene responsive element binding protein signature 381 401 IPR001471 GO:0003700|GO:0006355
Vivi2g01078 538 CDD AP2 238 307 IPR001471 GO:0003700|GO:0006355
Vivi2g01078 538 SUPERFAMILY DNA-binding domain 340 400 IPR016177 GO:0003677
Vivi2g01078 538 FunFam AP2-like ethylene-responsive transcription factor 340 401 - -
Vivi2g01078 538 CDD AP2 340 399 IPR001471 GO:0003700|GO:0006355
Vivi2g01078 538 Pfam AP2 domain 341 391 IPR001471 GO:0003700|GO:0006355
Vivi2g01078 538 Pfam AP2 domain 239 297 IPR001471 GO:0003700|GO:0006355
Vivi2g01078 538 MobiDBLite consensus disorder prediction 96 112 - -
Vivi2g01078 538 MobiDBLite consensus disorder prediction 78 147 - -
Vivi2g01078 538 MobiDBLite consensus disorder prediction 113 143 - -
Vivi2g01078 538 ProSiteProfiles AP2/ERF domain profile. 341 399 IPR001471 GO:0003700|GO:0006355
Vivi2g01078 538 ProSiteProfiles AP2/ERF domain profile. 239 305 IPR001471 GO:0003700|GO:0006355
Vivi2g01078 538 Gene3D AP2/ERF domain 239 307 IPR036955 GO:0003700|GO:0006355
Vivi2g01078 538 Gene3D AP2/ERF domain 341 401 IPR036955 GO:0003700|GO:0006355
Vivi2g01078 538 FunFam AP2-like ethylene-responsive transcription factor ANT 238 307 - -
Vivi2g01078 538 SUPERFAMILY DNA-binding domain 238 307 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01078 Vivi-Chr2 43602225 43606906 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01078 89 538 AP2-EREBP Transcription Factor Family AT5G10510 56.867 1.52e-160 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vivi2g01078 AP2 6.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01078 K09285 - gmx:100775390 726.857