Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01077 ATGGAATCAAGCGTTGATAATAACGGAAAAGAGTTTTCTAGCGACGATGACGCATCGCCAAGAGCGGTACTAGACACGCCTGTTTCAGGAACAGAGTCGGACAACAGTGGGAGCAGCAGTTTCGGCTCTTATTCACCGGAGAAGTCGCCTTCACCGCCGCCGATAGGAAAATCAGGCGGTGTAAAAGAAACTCAATTGCAGCAATGGAAAACAATGGTGGATGTTTTTAGGTTTAAGTCGGTGAGAAAATTATCGGCCATTCCTATTTTTACTGCGGCCACGCACGAAATTACTAGGAAAGGTTTTACTAAGAAATTGGCTCGGGTTCGAAGTGCGGAAGAGAGTATTGATATTGGTGCTATTCCGACGAAACCTTCTTGGAGGAACTTTGATTATGCTGAACTTGCTGCTGCTACTAATGATTTCGATTCTGAGAACTTGGTTGGAAAAGGTGGTCATGCTGAAGTATACAAAGGACAATTATCAGATGGTCAAGTTGTAGCAGTTAAGAGGCTAATGAAGAACGATAAGGATTTCGCCGATAGAGCCGGTGATTTCTTGACGGAGCTTGGAATCATCGCGCACATAAGCCACCCGAATGCTACACACCTTATAGGGTTTGGTATCGAAAAAGGTCTCTACTTTGTCCTACAATTAGCACCATATGGAAGTCTTTCGTCTTTACTCTTCGGTTCTGAAGGCTTAGAGTGGAAGACAAGGTACAAGGTAGCTATCGGAGTAGCTAACGGATTGCATTATCTTCATAAAGATTGTCCGAGACGAATTATTCACAGGGACATCAAAGCCTCCAACATATTACTCAATGATAATTATGAAGCTGAGATATCTGATTTTGGACTTGCAAAATGGCTTCCAAATAATTGGGCACACCATGTTGTTTTTCCTATAGAAGGAACATTTGGATATTTGGCTCCGGAGTACTTTATGCATGGTATTGTGGATGAGAAGACTGACGTGTTCGCATTCGGCGTTTTGCTACTCGAACTTATAACAGGTCGTCGTGCTGTTGATTCGGATAGTAGGCAAAGTCTTGTGATTTGGGCCAAGCCACTACTTGATTCAAACAATGTCAAGGAGCTAACAGATCCGAGATTAGAAGAGAATTATGATCCTATTGAAATGAAGCGTACCATGGCAACGGCTTCCTTGTGCGTCCACCATTCAACCTCCAAGCGTCCATTCATGAAACAGGCTACACGGCTATTAAAGGGCGAGGAAACAATGTTAGATTCCAAGGCAAACTCAGGTTCCTCAAAATCACTCATGTTAGAGGCATGTGACTTAGAAGATTACACTTGTTCAAATTACTTGAAGGACCTAAACCGCCATAGGGAACTAATCATGGAATGA 1371 0.4303 MESSVDNNGKEFSSDDDASPRAVLDTPVSGTESDNSGSSSFGSYSPEKSPSPPPIGKSGGVKETQLQQWKTMVDVFRFKSVRKLSAIPIFTAATHEITRKGFTKKLARVRSAEESIDIGAIPTKPSWRNFDYAELAAATNDFDSENLVGKGGHAEVYKGQLSDGQVVAVKRLMKNDKDFADRAGDFLTELGIIAHISHPNATHLIGFGIEKGLYFVLQLAPYGSLSSLLFGSEGLEWKTRYKVAIGVANGLHYLHKDCPRRIIHRDIKASNILLNDNYEAEISDFGLAKWLPNNWAHHVVFPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLELITGRRAVDSDSRQSLVIWAKPLLDSNNVKELTDPRLEENYDPIEMKRTMATASLCVHHSTSKRPFMKQATRLLKGEETMLDSKANSGSSKSLMLEACDLEDYTCSNYLKDLNRHRELIME 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01077 456 ProSiteProfiles Protein kinase domain profile. 142 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g01077 456 ProSitePatterns Protein kinases ATP-binding region signature. 148 170 IPR017441 GO:0005524
Vivi2g01077 456 MobiDBLite consensus disorder prediction 1 63 - -
Vivi2g01077 456 MobiDBLite consensus disorder prediction 26 46 - -
Vivi2g01077 456 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 119 219 - -
Vivi2g01077 456 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 221 423 - -
Vivi2g01077 456 Pfam Protein kinase domain 144 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g01077 456 SMART serkin_6 142 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g01077 456 PANTHER OS08G0249100 PROTEIN 13 429 IPR046958 -
Vivi2g01077 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Vivi2g01077 456 Gene3D Transferase(Phosphotransferase) domain 1 221 430 - -
Vivi2g01077 456 SUPERFAMILY Protein kinase-like (PK-like) 126 410 IPR011009 -
Vivi2g01077 456 Gene3D Phosphorylase Kinase; domain 1 103 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01077 Vivi-Chr2 43479204 43484031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01077 115 439 Trihelix Transcription Factor Family AT5G38560 41.429 2.33e-72 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vivi2g01077 Pkinase 3.4e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01077 - - gmx:100818314 671.389