Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01026 ATGGAAGGTGGCATGAATAAAAGGGTTCTCTTGTTGTTGTGGTATATAGTGTCTTTTCAACTCTGTTTCATTCATGGTGCTCATTCTGAGAATTTTTCATTCAGAAGAAACTTGAGGAAATTCGACAACCTAGAATCGACGAGTGCTAATTCTCGAGTCACTCTTAATAATCAAAATTCTGAACAGGTGGTGATTAGCAATGGAATAATTTCTCTCACTTTGTCCAACCCTGAAGGGTATGTCAGAGGATTATCATATGCTGGAATAGATAATGTACTTGATGCAAGAAATGAAGAAAATGATAGAGGGTACTTAGACATTTCTTCTGGCAAGTTAACTCAAAGAGTTGAAGGGACAAATTTCACTGTAATTACAAACAAGGAGAATATAGTTGAGGTTTCATTTTTAAGGACATGGAGATCTTCCATGGATTCTTCAAATGTACCTATAAACATGGACCAAAGGTATATATTGCGAAGTGGTGATTCAGGGTTTTATTCCTATGTGATATTTCAAAGGCCAAAAGGATTTCCTGCCATTACAATTGATCAAATAAGGATTGTTTATAAGCTAAATGAAGCCAGATTCAACTATATGGCCATATCAGATACTAGACAAAGAAAAATGCCATCTAACAATGATAGAAAAAGAGGACAACAATTAGCATTTCCTGAAGCTGTTCTGTTAACTAATCCATCTAATCCAGAATTTAAAGGAGAGGTGGATGATAAATATCAATACTCAAGTGAAAATCAATACAACCAAGTTAATGGATGGATTACCGCGGATTCCGAAAAGCCCGTGGGCTTTTGGATCATAACACCGAGCAATGAGTTCCGCAATGGTGGGCCTGTTAAACAAGATCTCACATCTCATGTTGGCCCAATTTGCCTCTCAATGTTTGTGAGCACCCACTATGCTGGTACACAGGTAGAAATAGAATTCAAAGAAGGAGAGACATATAAAAAGGTTTTTGGACCTATTTTTGTTTACTTGAATTCTGCTTCAAGTAATAATCAATTCAAATCTCTATGGTCAGATGCTAAACAAAAGCTATCGAGTGAAGTTAAAAATTGGCCTTATGATTTTCCTCAATCAAAAGATTTTATTCCACCTAACCAAAGAGGATCACTACAAGGAAGATTAAGAGTCCAAGACTGGAGGAATCAATCTCAAAATGCTAACAATGCTTACATTGGTCTAGCTCTGCCTGGGCCTGCAGGGTCGTGGCAGATAGAAGGCAAGGGATATCAATTTTGGACTCGATCAGACAAAAATGGAAACTTTATTATAAAGAATATTGTACCTGGAATATACAACTTGTTTGCATGGGTTCCTGGCTTCATTGGAGATTACAAATATAATAATGATATTACAATTAAACCAGGATCTACCATCAATTTGAATTCACTTGTATATAATCCTCCAAGAAATGGCCCTACTTTATGGGAAATCGGCATTCCAGATCGATCGGCCGCTGAATTTTTTGTACCAAACCCTTATCCTAACCTCTTAAACAAATTATATATTAACAGCCCGATAGACAAGTTTAGGAATTATGGATTATGGAATCGTTACACCGATTTATATCCAAAACATGACCTTGTTTACAAAGTTGGTGTTAGTAAATATCAAAATGATTGGTTTTTCGCTCATGTTCCAAGAATCATAGGAAATAAAACTTATCAAGCAACCACATGGAATGTTATATTTAAACTTAGTAATGTATTAAATGGAAATTACACATTACAACTTGCCCTAGCAAGTGCCTCTTATGCTGAAGTACAGGTTTGGTTCAATAACATGAGAGATGATCTTCCTTACTTCACAACAAATAGAATAGGAGGTGACAATGTCATACCAAGACATGGAATCCATGGACTATATTGGTTATTTACTATACAAGTACCAAGTATTCATTTGGTGAAAGGAGATAACACATTATATTTGAGACAATCAAGATATGGATCAATTTTTCAAGGAGTTTTATATGATTATATCCGCTTAGAAAGTCCTCCCACTACCAAGTTGAATGTGTGA 2040 0.3564 MEGGMNKRVLLLLWYIVSFQLCFIHGAHSENFSFRRNLRKFDNLESTSANSRVTLNNQNSEQVVISNGIISLTLSNPEGYVRGLSYAGIDNVLDARNEENDRGYLDISSGKLTQRVEGTNFTVITNKENIVEVSFLRTWRSSMDSSNVPINMDQRYILRSGDSGFYSYVIFQRPKGFPAITIDQIRIVYKLNEARFNYMAISDTRQRKMPSNNDRKRGQQLAFPEAVLLTNPSNPEFKGEVDDKYQYSSENQYNQVNGWITADSEKPVGFWIITPSNEFRNGGPVKQDLTSHVGPICLSMFVSTHYAGTQVEIEFKEGETYKKVFGPIFVYLNSASSNNQFKSLWSDAKQKLSSEVKNWPYDFPQSKDFIPPNQRGSLQGRLRVQDWRNQSQNANNAYIGLALPGPAGSWQIEGKGYQFWTRSDKNGNFIIKNIVPGIYNLFAWVPGFIGDYKYNNDITIKPGSTINLNSLVYNPPRNGPTLWEIGIPDRSAAEFFVPNPYPNLLNKLYINSPIDKFRNYGLWNRYTDLYPKHDLVYKVGVSKYQNDWFFAHVPRIIGNKTYQATTWNVIFKLSNVLNGNYTLQLALASASYAEVQVWFNNMRDDLPYFTTNRIGGDNVIPRHGIHGLYWLFTIQVPSIHLVKGDNTLYLRQSRYGSIFQGVLYDYIRLESPPTTKLNV 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01026 679 Gene3D - 479 670 - -
Vivi2g01026 679 Gene3D - 370 470 - -
Vivi2g01026 679 Pfam Polysaccharide lyase family 4, domain III 481 669 IPR029411 -
Vivi2g01026 679 Gene3D - 50 350 IPR014718 GO:0030246
Vivi2g01026 679 SUPERFAMILY Galactose mutarotase-like 58 337 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vivi2g01026 679 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 54 673 - -
Vivi2g01026 679 CDD RGL4_N 59 337 - -
Vivi2g01026 679 CDD RGL4_M 374 471 IPR029413 -
Vivi2g01026 679 Pfam Polysaccharide lyase family 4, domain II 395 468 IPR029413 -
Vivi2g01026 679 SUPERFAMILY Galactose-binding domain-like 478 670 IPR008979 -
Vivi2g01026 679 Pfam Rhamnogalacturonate lyase family 47 241 IPR010325 -
Vivi2g01026 679 SUPERFAMILY Starch-binding domain-like 371 470 IPR013784 GO:0030246
Vivi2g01026 679 CDD RGL4_C 483 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01026 Vivi-Chr2 40955165 40959635 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01026 62 672 Polysaccharide Lyase AT1G09890 53.846 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01026 K18195 - gmx:100776664 880.552