Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01025 ATGAAGATGAAACATGGCATGAATAGAATGGTTTTCTTGTTGTTGCAGTATATAATGGCTTTGCAACTTTGTTTCATTTTTGGTGCTTATTCAGAGAATGTCCCAACCAGAATCTTGAGAAAAATCCACCACCATCACCACGGATCGAGGAATCCTAAACCTCCAGTCATTCTTAATAATCGAAATTCTGCTCAGGTGGTGATTAGAAATGGAATTATTTCCATCACTTTGTCCAAACCTGGAGGATATGTCAAAGGAATATCATATTCTAACATTGACAATGTACTTGAAACTAGATACGAAGAGAATGACAGAGGCTACTTGGACGTTGTTTTTGGCAAAAAATTTCAGAGAATTCATGGGACAAATTTCTCAATCATAAGACGAAACAAGAATATAGTAGAGGTTTCATTTTTAAGGACATGGAAACCTTCTATGAATGCCTCAAATGTACCTATAAACATTGACCAAAGGTATATATTACGAAGAGGTGATTCAGGGTTTTATTCTTACATGATATTTGAACGACCAAAAGGATTCCTTGCTAAGAAAATTGATCAAATAAGGGTCGTTTATAAACTCAAGGAAGCCAGCTTCAACTATATGGCCATTTCAGATACTAGGCAAAGAAAAATGCCATCGAAGATAGACAGAGAAGCAGGAAAAGTCTTAGCATATCCTGAAGCTGTTCTGTTAACAAATCCTTCAAACCCAGAATTCAAAGGAGAGGTGGATGACAAATACCAATACTCAAGTGAAAATCAATACAACCAAGTTCACGGATGGATTACTGCAGATTCTAAAAAGCCCGTGGGTTTTTGGATTATAACACCAAGCAATGAGTTCCGCAATGGCGGGCCGGTTAAACAAGACCTCACATCTCATGTTGGCCCAACTAGCCTCTCAATGTTTGTGAGCACCCACTATGGTGGTAAACGGTTAGCCCTAGAATTCAAAGAAGGAGAGACATATAAAAAGGTTTTTGGACCTATTTTTGTTTACTTGAATTCTGCTCCAAGTAATAATCAATTCAAATCTCTATGGTCAGATGCTAAACATAAGTTATTGAATGAAGTTAAGAGTTGGCCTTATGAATTTCTTCATTCAAAAGATTTTATTCCACGCCATCAAAGAGGAACACTACAAGCACATTTGCAAGTTCAAGATGGGTGGAATAAATCTCAAAATGCAAACAAAGCTTATATTGGTCTAGCTTCGCCTGGAGTTGCAGGATCATGGCAGAGAGAAAGCAAGGGATATCAATTTTGGACTCGATCAGATCAAAATGGAAACTTTATTATAAAAAACATTATACCTGGAGTATACAACTTGTTTGCATGGGTTCCTGGCTTCATTGGAGATTACAAATATAATGATGAAATTACAATTAAACCAGGATCTACCATCAAATTAAATTCACTTGTGTATAATCCTCCAAGAAATGGTCCTACTCTATGGGAAATCGGCATTCCAGATCGATCTGCAGCTGAATTTTATGTGCCAAACCCTTATCCTAACCTCATCAACAAATTATACGCAAACAACCACGTTCAGAAATTTAGGAATTATGGATTATGGAGTCGTTACACTGATTTATATGCAAAACACGACCTTGTTTACAAAGTTGGTCTTAGTGACTATCAAAATGATTGGTTTTTCGCTCATGTTCCAAGAATCATAGGAAATAAAACTTATGAAGCAACCACGTGGAACGTTACGTTTGAACTTAGTGATGTATTGAATGGAAACTACACATTACAAATTGCCCTAGCAAGTGCCTCTAATGCTGAAGTACAGGTTTGGTTCAATAACGTAAGATCTAAACGTCCTTACTTCACAACAAAACGAATAGGAGATGACAACACCATACCAAGACATGGAATTCATGGATTATATTGGTTGTTTAGCATACAAGTACCTAGTGTTCATTTTGTGAAAGGAAACAATATGTTACATTTGAGACAATCAAGATGTGCAACACTTTTCCAAGGAGTTCTATATGATTATATTCGCTTAGAAAATCCTCCAACTTCCAAATTGATAATGTGA 2049 0.3641 MKMKHGMNRMVFLLLQYIMALQLCFIFGAYSENVPTRILRKIHHHHHGSRNPKPPVILNNRNSAQVVIRNGIISITLSKPGGYVKGISYSNIDNVLETRYEENDRGYLDVVFGKKFQRIHGTNFSIIRRNKNIVEVSFLRTWKPSMNASNVPINIDQRYILRRGDSGFYSYMIFERPKGFLAKKIDQIRVVYKLKEASFNYMAISDTRQRKMPSKIDREAGKVLAYPEAVLLTNPSNPEFKGEVDDKYQYSSENQYNQVHGWITADSKKPVGFWIITPSNEFRNGGPVKQDLTSHVGPTSLSMFVSTHYGGKRLALEFKEGETYKKVFGPIFVYLNSAPSNNQFKSLWSDAKHKLLNEVKSWPYEFLHSKDFIPRHQRGTLQAHLQVQDGWNKSQNANKAYIGLASPGVAGSWQRESKGYQFWTRSDQNGNFIIKNIIPGVYNLFAWVPGFIGDYKYNDEITIKPGSTIKLNSLVYNPPRNGPTLWEIGIPDRSAAEFYVPNPYPNLINKLYANNHVQKFRNYGLWSRYTDLYAKHDLVYKVGLSDYQNDWFFAHVPRIIGNKTYEATTWNVTFELSDVLNGNYTLQIALASASNAEVQVWFNNVRSKRPYFTTKRIGDDNTIPRHGIHGLYWLFSIQVPSVHFVKGNNMLHLRQSRCATLFQGVLYDYIRLENPPTSKLIM 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01025 682 CDD RGL4_M 377 474 IPR029413 -
Vivi2g01025 682 Pfam Polysaccharide lyase family 4, domain II 398 471 IPR029413 -
Vivi2g01025 682 CDD RGL4_N 62 338 - -
Vivi2g01025 682 SUPERFAMILY Galactose-binding domain-like 481 673 IPR008979 -
Vivi2g01025 682 Pfam Rhamnogalacturonate lyase family 47 244 IPR010325 -
Vivi2g01025 682 SUPERFAMILY Galactose mutarotase-like 62 339 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vivi2g01025 682 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 60 676 - -
Vivi2g01025 682 Gene3D - 482 673 - -
Vivi2g01025 682 SUPERFAMILY Starch-binding domain-like 413 473 IPR013784 GO:0030246
Vivi2g01025 682 CDD RGL4_C 486 673 - -
Vivi2g01025 682 Pfam Polysaccharide lyase family 4, domain III 484 672 IPR029411 -
Vivi2g01025 682 Gene3D - 373 473 - -
Vivi2g01025 682 Gene3D - 58 351 IPR014718 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01025 Vivi-Chr2 40714716 40739404 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01025 65 675 Polysaccharide Lyase AT1G09890 53.859 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01025 K18195 - gmx:100781089 854.744