Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g01006 ATGGGAAGAAGTAAGGTACAGCTAAAACGGATCGAGAACAAGATCAATCGACAGGTTACTTTCTCAAAAAGAAGAACTGGTTTGCTCAAGAAAGCTAATGAGATCTCTGTTCTTTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCTCATAATGGAAAACTCTTTGAGTATTCAACTGATTCCTGCATGGAGCAGATACTAGAACGCCATGAAAGGTATGGCTATGCAGAGAAACTGCTAGTAGCAAATGATACTACTGACACTCAGGAAAACTGGACAGTTGAATACACTAGGCTCAAGGCAAAGATAGATCTTATGGAGAGAAACCACAGGCACTACATGGGAGAAGGTCTAGCTACAATGAGTCTGAAAGAGCTTCAATGTCTAGAACAGCAGTTAGATACTGGTCTCAAGAACATCCGTACCCGCAGAACTCAAGTCATGTATGAGGCCATATCTGAACTTCAGAAAAAGGAGAAGGGGATACAAGAGCAGAATAACATGCTCTCAAAAGAGATAAAGGAGAAAGAAAAGGCGGTTGCACAGGAGGCCGCGGCGGCTGCTGCTTCTGCTCAATGGGAGCAGCCAAACTACAGAGTTGATAATACATCTTTCTTTCTACATCACCCTCTTGCTGGTTTAAACATGGGTGACAACTACCGTGAGGGAGATCAGGAACTCATGAGGAACGGCCTTGACCTCACTCTTGAACCACTATATTATTAA 726 0.4284 MGRSKVQLKRIENKINRQVTFSKRRTGLLKKANEISVLCDAEVALIVFSHNGKLFEYSTDSCMEQILERHERYGYAEKLLVANDTTDTQENWTVEYTRLKAKIDLMERNHRHYMGEGLATMSLKELQCLEQQLDTGLKNIRTRRTQVMYEAISELQKKEKGIQEQNNMLSKEIKEKEKAVAQEAAAAAASAQWEQPNYRVDNTSFFLHHPLAGLNMGDNYREGDQELMRNGLDLTLEPLYY 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g01006 241 Coils Coil 89 109 - -
Vivi2g01006 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi2g01006 241 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Vivi2g01006 241 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Vivi2g01006 241 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Vivi2g01006 241 Coils Coil 152 182 - -
Vivi2g01006 241 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi2g01006 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi2g01006 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi2g01006 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi2g01006 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi2g01006 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi2g01006 241 Pfam K-box region 85 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi2g01006 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Vivi2g01006 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi2g01006 241 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g01006 Vivi-Chr2 39251884 39261078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g01006 1 240 MADS-box Gene Family AT1G26310 59.684 1.12e-99 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi2g01006 K-box 1.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g01006 K09264 - gmx:100810129 326.25